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  1. Thioalkalivibrio thiocyanoxidans strain ARh 2T is a sulfur-oxidizing bacterium isolated from haloalkaline soda lakes. It is a motile, Gram-negative member of the Gammaproteobacteria. Rema...

    Authors: Tom Berben, Dimitry Y. Sorokin, Natalia Ivanova, Amrita Pati, Nikos Kyrpides, Lynne A. Goodwin, Tanja Woyke and Gerard Muyzer

    Citation: Standards in Genomic Sciences 2015 10:85

    Content type: Short genome report

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  2. Thioalkalivibrio thiocyanodenitrificans strain ARhD 1T is a motile, Gram-negative bacterium isolated from soda lakes that belongs to the Gammaproteobacteria. It derives energy for growth ...

    Authors: Tom Berben, Dimitry Y. Sorokin, Natalia Ivanova, Amrita Pati, Nikos Kyrpides, Lynne A. Goodwin, Tanja Woyke and Gerard Muyzer

    Citation: Standards in Genomic Sciences 2015 10:84

    Content type: Short genome report

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  3. Propionibacterium freudenreichii subsp. freudenreichii DSM 20271T is the type strain of species Propionibacterium freudenreichii that has a long history of safe use in the production dair...

    Authors: Patrik Koskinen, Paulina Deptula, Olli-Pekka Smolander, Fitsum Tamene, Juhana Kammonen, Kirsi Savijoki, Lars Paulin, Vieno Piironen, Petri Auvinen and Pekka Varmanen

    Citation: Standards in Genomic Sciences 2015 10:83

    Content type: Short genome report

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  4. The bacterial genus Polaribacter is distributed widely in marine environments; however, there have been no reports of phages infecting Polaribacter strains. Here, we describe the isolation and genome sequencing o...

    Authors: Ilnam Kang, Hani Jang and Jang-Cheon Cho

    Citation: Standards in Genomic Sciences 2015 10:82

    Content type: Short genome report

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  5. Geobacillus sp. Y412MC52 was isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the National Park Service. The genome was sequenced, assembled, a...

    Authors: Phillip Brumm, Miriam L. Land, Loren J. Hauser, Cynthia D. Jeffries, Yun-Juan Chang and David A. Mead

    Citation: Standards in Genomic Sciences 2015 10:81

    Content type: Short genome report

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    The Erratum to this article has been published in Standards in Genomic Sciences 2016 11:10

  6. Cupriavidus sp. strain AMP6 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Mimosa asperata collected in Santa Ana National Wildlife Re...

    Authors: Sofie E. De Meyer, Matthew Parker, Peter Van Berkum, Rui Tian, Rekha Seshadri, T.B.K. Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Nikos Kyrpides, John Howieson and Wayne Reeve

    Citation: Standards in Genomic Sciences 2015 10:80

    Content type: Short genome report

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  7. Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected in Nieu...

    Authors: Sofie E. De Meyer, Rui Tian, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Nikos Kyrpides, Ron Yates, John Howieson and Wayne Reeve

    Citation: Standards in Genomic Sciences 2015 10:79

    Content type: Short genome report

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  8. Mycobacterium tuberculosis K, a member of the Beijing family, was first identified in 1999 as the most prevalent genotype in South Korea among clinical isolates of M. tuberculosis from hi...

    Authors: Seung Jung Han, Taeksun Song, Yong-Joon Cho, Jong-Seok Kim, Soo Young Choi, Hye-Eun Bang, Jongsik Chun, Gill-Han Bai, Sang-Nae Cho and Sung Jae Shin

    Citation: Standards in Genomic Sciences 2015 10:78

    Content type: Short genome report

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  9. “Geoglobus ahangari” strain 234T is an obligate Fe(III)-reducing member of the Archaeoglobales, within the archaeal phylum Euryarchaeota, isolated from the Guaymas Basin hydrothermal syst...

    Authors: Michael P. Manzella, Dawn E. Holmes, Jessica M. Rocheleau, Amanda Chung, Gemma Reguera and Kazem Kashefi

    Citation: Standards in Genomic Sciences 2015 10:77

    Content type: Extended Genome Report

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  10. Thermus sp. strain CCB_US3_UF1 is a thermophilic bacterium of the genus Thermus, a member of the family Thermaceae. Members of the genus Thermus have been widely used as a biological mode...

    Authors: Beng Soon Teh, Nyok-Sean Lau, Fui Ling Ng, Ahmad Yamin Abdul Rahman, Xuehua Wan, Jennifer A. Saito, Shaobin Hou, Aik-Hong Teh, Nazalan Najimudin and Maqsudul Alam

    Citation: Standards in Genomic Sciences 2015 10:76

    Content type: Short genome report

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  11. Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microb...

    Authors: Julie L. Meyer, Brian A. Dillard, John M. Rodgers, Kim B. Ritchie, Valerie J. Paul and Max Teplitski

    Citation: Standards in Genomic Sciences 2015 10:75

    Content type: Short genome report

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  12. Thermoanaerobacter thermohydrosulfuricus BSB-33 is a thermophilic gram positive obligate anaerobe isolated from a hot spring in West Bengal, India. Unlike other T. thermohydrosulfuricus s...

    Authors: Pamela Bhattacharya, Adam Barnebey, Marcin Zemla, Lynne Goodwin, Manfred Auer and Steven M. Yannone

    Citation: Standards in Genomic Sciences 2015 10:74

    Content type: Genome report

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  13. Geobacillus thermoglucosidasius C56-YS93 was one of several thermophilic organisms isolated from Obsidian Hot Spring, Yellowstone National Park, Montana, USA under permit from the Nationa...

    Authors: Phillip J. Brumm, Miriam L. Land and David A. Mead

    Citation: Standards in Genomic Sciences 2015 10:73

    Content type: Short genome report

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  14. Fervidobacterium islandicum AW-1 (KCTC 4680) is an extremely thermophilic anaerobe isolated from a hot spring in Indonesia. This bacterium could degrade native chicken feathers completely...

    Authors: Yong-Jik Lee, Haeyoung Jeong, Gun-Seok Park, Yunyoung Kwak, Sang-Jae Lee, Sang Jun Lee, Min-Kyu Park, Ji-Yeon Kim, Hwan Ku Kang, Jae-Ho Shin and Dong-Woo Lee

    Citation: Standards in Genomic Sciences 2015 10:71

    Content type: Short genome report

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  15. Species of Anoxybacillus are thermophiles and, therefore, their enzymes are suitable for many biotechnological applications. Anoxybacillus ayderensis AB04T (= NCIMB 13972T = NCCB 100050T) was isolated from the Ay...

    Authors: Ali Osman Belduz, Sabriye Canakci, Kok-Gan Chan, Ummirul Mukminin Kahar, Chia Sing Chan, Amira Suriaty Yaakop and Kian Mau Goh

    Citation: Standards in Genomic Sciences 2015 10:70

    Content type: Short genome report

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  16. Plant necrotrophic Dickeya spp. are among the top ten most devastating bacterial plant pathogens able to infect a number of different plant species worldwide including economically important crops. Little is know...

    Authors: Robert Czajkowski, Zofia Ozymko, Joanna Siwinska, Adam Ossowicki, Victor de Jager, Magdalena Narajczyk and Ewa Łojkowska

    Citation: Standards in Genomic Sciences 2015 10:68

    Content type: Short genome report

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  17. ‘Treponema phagedenis’ is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby ...

    Authors: Mamoona Mushtaq, Shahid Manzoor, Märit Pringle, Anna Rosander and Erik Bongcam-Rudloff

    Citation: Standards in Genomic Sciences 2015 10:67

    Content type: Short genome report

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  18. Flavihumibacter solisilvae 3-3T (= KACC 17917T = JCM 19891T) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole car...

    Authors: Gang Zhou, Chong Chen, Che Ok Jeon, Gejiao Wang and Mingshun Li

    Citation: Standards in Genomic Sciences 2015 10:66

    Content type: Short genome report

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  19. Knowledge of the diversity and ecological function of the microbial consortia of James River in Virginia, USA, is essential to developing a more complete understanding of the ecology of this model river system...

    Authors: Bonnie L. Brown, Rebecca V. LePrell, Rima B. Franklin, Maria C. Rivera, Francine M. Cabral, Hugh L. Eaves, Vicki Gardiakos, Kevin P. Keegan and Timothy L. King

    Citation: Standards in Genomic Sciences 2015 10:65

    Content type: Metagenome report

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  20. Burkholderia dilworthii strain WSM3556T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected...

    Authors: Sofie E. De Meyer, Rui Tian, Rekha Seshadri, Natalia Ivanova, Amrita Pati, Victor Markowitz, Tanja Woyke, Ron Yates, John Howieson, Nikos Kyrpides and Wayne Reeve

    Citation: Standards in Genomic Sciences 2015 10:64

    Content type: Short genome report

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  21. Clostridium ihumii strain AP5T sp. nov. is a new species within the genus Clostridium. This strain, whose genome is described here, was isolated from the stool sample of a 21-year-old Fre...

    Authors: Vicky Merhej, Anne Pfleiderer, Dhamodharan Ramasamy, Jean-Christophe Lagier, Caroline Michelle, Didier Raoult and Pierre-Edouard Fournier

    Citation: Standards in Genomic Sciences 2015 10:63

    Content type: Short genome report

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  22. Bacillus thuringiensis is the most widely used biological pesticide in the world. It belongs to the Bacillus cereus sensu lato group, which contains six species. Among these six species,

    Authors: Qiao Li, Li Z. Xu, Ting Zou, Peng Ai, Gang H. Huang, Ping Li and Ai P. Zheng

    Citation: Standards in Genomic Sciences 2015 10:62

    Content type: Extended genome report

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  23. The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderat...

    Authors: Jacqueline Goordial, Isabelle Raymond-Bouchard, Jennifer Ronholm, Nicole Shapiro, Tanja Woyke, Lyle Whyte and Corien Bakermans

    Citation: Standards in Genomic Sciences 2015 10:61

    Content type: Short genome report

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  24. Vibrio anguillarum causes a fatal hemorrhagic septicemia in marine fish that leads to great economical losses in aquaculture world-wide. Vibrio anguillarum strain NB10 serotype O1 is a Gr...

    Authors: Kåre Olav Holm, Kristina Nilsson, Erik Hjerde, Nils-Peder Willassen and Debra L. Milton

    Citation: Standards in Genomic Sciences 2015 10:60

    Content type: Extended genome report

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  25. Streptomyces sp. TP-A0598, isolated from seawater, produces lydicamycin, structurally unique type I polyketide bearing two nitrogen-containing five-membered rings, and four congeners TPU-...

    Authors: Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Nobuyuki Fujita and Yasuhiro Igarashi

    Citation: Standards in Genomic Sciences 2015 10:58

    Content type: Extended genome report

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  26. Methanosarcina species are the most metabolically versatile of the methanogenic Archaea and can obtain energy for growth by producing methane via the hydrogenotrophic, acetoclastic or met...

    Authors: Suzanne C. Lambie, William J. Kelly, Sinead C. Leahy, Dong Li, Kerri Reilly, Tim A. McAllister, Edith R. Valle, Graeme T. Attwood and Eric Altermann

    Citation: Standards in Genomic Sciences 2015 10:57

    Content type: Short genome report

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  27. The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotr...

    Authors: Sophie R. Ullrich, Anja Poehlein, Sonja Voget, Michael Hoppert, Rolf Daniel, Andreas Leimbach, Judith S. Tischler, Michael Schlömann and Martin Mühling

    Citation: Standards in Genomic Sciences 2015 10:56

    Content type: Extended Genome Report

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  28. Polycyclic aromatic hydrocarbons (PAH) are ubiquitous environmental pollutants and microbial biodegradation is an important means of remediation of PAH-contaminated soil. Delftia acidovorans Cs1-4 (formerly Delft...

    Authors: Ameesha R. Shetty, Vidya de Gannes, Chioma C. Obi, Susan Lucas, Alla Lapidus, Jan-Fang Cheng, Lynne A. Goodwin, Samuel Pitluck, Linda Peters, Natalia Mikhailova, Hazuki Teshima, Cliff Han, Roxanne Tapia, Miriam Land, Loren J. Hauser, Nikos Kyrpides…

    Citation: Standards in Genomic Sciences 2015 10:55

    Content type: Extended genome report

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  29. Mesorhizobium loti strain CJ3Sym was isolated in 1998 following transfer of the integrative and conjugative element ICEMlSymR7A, also known as the R7A symbiosis island, in a laboratory ma...

    Authors: Wayne Reeve, John Sullivan, Clive Ronson, Rui Tian, Christine Munk, Cliff Han, T.B.K. Reddy, Rekha Seshadri, Tanja Woyke, Amrita Pati, Victor Markowitz, Natalia Ivanova and Nikos Kyrpides

    Citation: Standards in Genomic Sciences 2015 10:54

    Content type: Short genome report

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  30. An extremely halophilic archaeon, Haladaptatus cibarius D43T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43T shows the highest 16S rRNA gene sequence similarity (98.7 %) with Halada...

    Authors: Hae-Won Lee, Dae-Won Kim, Mi-Hwa Lee, Byung-Yong Kim, Yong-Joon Cho, Kyung June Yim, Hye Seon Song, Jin-Kyu Rhee, Myung-Ji Seo, Hak-Jong Choi, Jong-Soon Choi, Dong-Gi Lee, Changmann Yoon, Young-Do Nam and Seong Woon Roh

    Citation: Standards in Genomic Sciences 2015 10:53

    Content type: Short genome report

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  31. Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the deg...

    Authors: Spyridon Ntougias, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Amrita Pati, Natalia N. Ivanova, Victor M. Markowitz, Hans-Peter Klenk, Tanja Woyke, Constantinos Fasseas, Nikos C. Kyrpides and Georgios I. Zervakis

    Citation: Standards in Genomic Sciences 2015 10:52

    Content type: Short genome report

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  32. Loktanella hongkongensis UST950701-009PT is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a...

    Authors: Stanley CK Lau, Thomas Riedel, Anne Fiebig, James Han, Marcel Huntemann, Jörn Petersen, Natalia N. Ivanova, Victor Markowitz, Tanja Woyke, Markus Göker, Nikos C. Kyrpides, Hans-Peter Klenk and Pei-Yuan Qian

    Citation: Standards in Genomic Sciences 2015 10:51

    Content type: Short genome report

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  33. Corynebacterium ulceribovis strain IMMIB L-1395T (= DSM 45146T) is an aerobic to facultative anaerobic, Gram-positive, non-spore-forming, non-motile rod-shaped bacterium that was isolated...

    Authors: Atteyet F. Yassin, Alla Lapidus, James Han, T.B.K. Reddy, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk and Nikos C. Kyrpides

    Citation: Standards in Genomic Sciences 2015 10:50

    Content type: Extended genome report

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  34. Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29T is the type strain of...

    Authors: In-Tae Cha, Mi-Hwa Lee, Byung-Yong Kim, Yong-Joon Cho, Dae-Won Kim, Kyung June Yim, Hye Seon Song, Myung-Ji Seo, Jin-Kyu Rhee, Jong-Soon Choi, Hak-Jong Choi, Changmann Yoon, Seong Woon Roh and Young-Do Nam

    Citation: Standards in Genomic Sciences 2015 10:49

    Content type: Short genome report

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  35. Bacteroides barnesiae Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. Strain BL2T is of interest because it was isolated from the gut of...

    Authors: Mitsuo Sakamoto, Alla L. Lapidus, James Han, Stephan Trong, Matthew Haynes, T. B. K. Reddy, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Natalia N. Ivanova, Rüdiger Pukall, Victor M. Markowitz, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Moriya Ohkuma

    Citation: Standards in Genomic Sciences 2015 10:48

    Content type: Short genome report

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  36. Strain JCET was isolated from the fecal sample of a 24-year-old obese man living in Jeddah, Saudi Arabia. It is an aerobic, Gram-positive, rod-shaped bacterium. This strain exhibits a 16S rRNA nucleotide sequence...

    Authors: Fadi Bittar, Fehmida Bibi, Dhamodharan Ramasamy, Jean-Christophe Lagier, Esam I. Azhar, Asif A. Jiman-Fatani, Ahmed K. Al-Ghamdi, Ti Thien Nguyen, Muhammad Yasir, Pierre-Edouard Fournier and Didier Raoult

    Citation: Standards in Genomic Sciences 2015 10:47

    Content type: Extended genome report

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  37. Flavobacterium rivuli Ali et al. 2009 emend. Dong et al. 2013 is one of about 100 species in the genus Flavobacterium (family Flavobacteriacae, phylum Bacteroidetes) with a validly publis...

    Authors: Richard L. Hahnke, Erko Stackebrandt, Jan P. Meier-Kolthoff, Brian J. Tindall, Sixing Huang, Manfred Rohde, Alla Lapidus, James Han, Stephan Trong, Matthew Haynes, T.B.K. Reddy, Marcel Huntemann, Amrita Pati, Natalia N. Ivanova, Konstantinos Mavromatis, Victor Markowitz…

    Citation: Standards in Genomic Sciences 2015 10:46

    Content type: Extended genome report

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  38. In an effort to identify the best practice for finding genes in prokaryotic genomes and propose it as a standard for automated annotation pipelines, 1,004,576 peptides were collected from various publicly avai...

    Authors: H. James Tripp, Granger Sutton, Owen White, Jennifer Wortman, Amrita Pati, Natalia Mikhailova, Galina Ovchinnikova, Samuel H. Payne, Nikos C. Kyrpides and Natalia Ivanova

    Citation: Standards in Genomic Sciences 2015 10:45

    Content type: Research

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  39. Rhizobium sullae strain WSM1592 is an aerobic, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N2) fixing root nodule formed on the short-lived perennia...

    Authors: Ron Yates, John Howieson, Sofie E. De Meyer, Rui Tian, Rekha Seshadri, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Angelo Loi, Brad Nutt, Giovanni Garau, Leonardo Sulas and Wayne Reeve

    Citation: Standards in Genomic Sciences 2015 10:44

    Content type: Short genome report

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  40. Shewanella algae strain C6G3, isolated from the 2 uppermost centimeters of muddy sediment of Arcachon Bay (SW Atlantic French coast, sampled in October 2007) has the capability to use a l...

    Authors: Axel Aigle, Valerie Michotey and Patricia Bonin

    Citation: Standards in Genomic Sciences 2015 10:43

    Content type: Short genome report

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  41. Strain FF4T was isolated from the skin flora of a 16-year-old healthy Senegalese female. This strain exhibited a 16S rRNA sequence similarity of 97.5 % with Bacillus fumarioli, the phylogenetically closest specie...

    Authors: Cheikh Ibrahima Lo, Roshan Padhmanabhan, Oleg Mediannikov, Jérôme Terras, Catherine Robert, Ngor Faye, Didier Raoult, Pierre-Edouard Fournier and Florence Fenollar

    Citation: Standards in Genomic Sciences 2015 10:41

    Content type: Short genome report

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  42. Clostridium sporogenes DSM 795 is the type strain of the species Clostridium sporogenes, first described by Metchnikoff in 1908. It is a Gram-positive, rod-shaped, anaerobic bacterium iso...

    Authors: Anja Poehlein, Karin Riegel, Sandra M König, Andreas Leimbach, Rolf Daniel and Peter Dürre

    Citation: Standards in Genomic Sciences 2015 10:40

    Content type: Extended genome report

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  43. Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ethe...

    Authors: Zsolt Szabó, Péter Gyula, Hermina Robotka, Emese Bató, Bence Gálik, Péter Pach, Péter Pekker, Ildikó Papp and Zoltán Bihari

    Citation: Standards in Genomic Sciences 2015 10:39

    Content type: Short genome report

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  44. Paenirhodobacter enshiensis is a non-photosynthetic species that belongs to family Rhodobacteraceae. Here we report the draft genome sequence of Paenirhodobacter enshiensis DW2-9T and com...

    Authors: Dan Wang, Fengqiu Zhu, Xiaoli Zhu, Shixue Zheng, Rui Wang and Gejiao Wang

    Citation: Standards in Genomic Sciences 2015 10:38

    Content type: Short genome report

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  45. Here we report a summary classification and the features of five anaerobic oral bacteria from the family Peptostreptococcaceae. Bacterial strains were isolated from human subgingival plaque. Strains ACC19a, CM2, ...

    Authors: Maria V. Sizova, Amanda Chilaka, Ashlee M. Earl, Sebastian N. Doerfert, Paul A. Muller, Manolito Torralba, Jamison M. McCorrison, A. Scott Durkin, Karen E. Nelson and Slava S. Epstein

    Citation: Standards in Genomic Sciences 2015 10:37

    Content type: Extended genome report

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  46. Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30...

    Authors: Andrzej Mazur, Sofie E. De Meyer, Rui Tian, Jerzy Wielbo, Kamil Zebracki, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia N. Ivanova, Amrita Pati, Tanja Woyke, Nikos C. Kyrpides and Wayne Reeve

    Citation: Standards in Genomic Sciences 2015 10:36

    Content type: Short Genome Report

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