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  1. Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37...

    Authors: Diogo N. Proença, William B. Whitman, Nicole Shapiro, Tanja Woyke, Nikos C. Kyrpides and Paula V. Morais

    Citation: Standards in Genomic Sciences 2017 12:53

    Content type: Short genome report

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  2. Frankia sp. NRRL B-16219 was directly isolated from a soil sample obtained from the rhizosphere of Ceanothus jepsonii growing in the USA. Its host plant range includes members of Elaeagna...

    Authors: Amir Ktari, Imen Nouioui, Teal Furnholm, Erik Swanson, Faten Ghodhbane-Gtari, Louis S. Tisa and Maher Gtari

    Citation: Standards in Genomic Sciences 2017 12:51

    Content type: Extended genome report

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  3. Bathymodiolus thermophilus, a mytilid mussel inhabiting the deep-sea hydrothermal vents of the East Pacific Rise, lives in symbiosis with chemosynthetic Gammaproteobacteria within its gil...

    Authors: Ruby Ponnudurai, Lizbeth Sayavedra, Manuel Kleiner, Stefan E. Heiden, Andrea Thürmer, Horst Felbeck, Rabea Schlüter, Stefan M. Sievert, Rolf Daniel, Thomas Schweder and Stephanie Markert

    Citation: Standards in Genomic Sciences 2017 12:50

    Content type: Extended genome report

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  4. Herein, we report the draft-genome sequences and annotation of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from humans. One strain (SC-57) was isolated from blood from a male patient in...

    Authors: Soraya Mendoza-Olazarán, José F. Garcia-Mazcorro, Rayo Morfín-Otero, Licet Villarreal-Treviño, Adrián Camacho-Ortiz, Eduardo Rodríguez-Noriega, Paola Bocanegra-Ibarias, Héctor J. Maldonado-Garza, Scot E. Dowd and Elvira Garza-González

    Citation: Standards in Genomic Sciences 2017 12:49

    Content type: Extended genome report

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  6. Pyrodictium delaneyi strain Hulk is a newly sequenced strain isolated from chimney samples collected from the Hulk sulfide mound on the main Endeavour Segment of the Juan de Fuca Ridge (4...

    Authors: Lucas M. Demey, Caitlin R. Miller, Michael P Manzella, Rachel R. Spurbeck, Sukhinder K. Sandhu, Gemma Reguera and Kazem Kashefi

    Citation: Standards in Genomic Sciences 2017 12:47

    Content type: Extended genome report

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  7. The genetic platforms of Deinococcus species remain the only systems in which massive ionizing radiation (IR)-induced genome damage can be investigated in vivo at exposures commensurate with cellular survival. We...

    Authors: Vera Y. Matrosova, Elena K. Gaidamakova, Kira S. Makarova, Olga Grichenko, Polina Klimenkova, Robert P. Volpe, Rok Tkavc, Gözen Ertem, Isabel H. Conze, Evelyne Brambilla, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2017 12:46

    Content type: Extended genome report

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  8. Pedobacter steynii DX4 was isolated from the soil of Tibetan Plateau and it can use crude oil as sole carbon and energy source at 15 °C. The genome of Pedobacter steynii DX4 has been sequ...

    Authors: Sijing Chang, Gaosen Zhang, Ximing Chen, Haozhi Long, Yilin Wang, Tuo Chen and Guangxiu Liu

    Citation: Standards in Genomic Sciences 2017 12:45

    Content type: Extended genome report

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  10. Fusibacter sp. 3D3 (ATCC BAA-2418) is an arsenate-reducing halotolerant strain within the Firmicutes phylum, isolated from the Salar de Ascotán, a hypersaline salt flat in Northern Chile....

    Authors: Antonio E. Serrano, Lorena V. Escudero, Cinthya Tebes-Cayo, Mauricio Acosta, Olga Encalada, Sebastián Fernández-Moroso and Cecilia Demergasso

    Citation: Standards in Genomic Sciences 2017 12:43

    Content type: Extended genome report

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  11. Xanthomonas citri pv. malvacearum is a major pathogen of cotton, Gossypium hirsutum L.. In this study we report the complete genome of the X. citri pv. malvacearum strain MSCT1 assembled ...

    Authors: Kurt C. Showmaker, Mark A. Arick II, Chuan-Yu Hsu, Brigitte E. Martin, Xiaoqiang Wang, Jiayuan Jia, Martin J. Wubben, Robert L. Nichols, Tom W. Allen, Daniel G. Peterson and Shi-En Lu

    Citation: Standards in Genomic Sciences 2017 12:42

    Content type: Extended genome report

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  12. We present the high quality, complete genome assembly of Neisseria lactamica Y92–1009 used to manufacture an outer membrane vesicle (OMV)-based vaccine, and a member of the Neisseria genus. The strain is availabl...

    Authors: Anish K. Pandey, David W. Cleary, Jay R. Laver, Martin C. J. Maiden, Xavier Didelot, Andrew Gorringe and Robert C. Read

    Citation: Standards in Genomic Sciences 2017 12:41

    Content type: Extended genome report

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    The Correction to this article has been published in Standards in Genomic Sciences 2018 13:4

  14. Halomonads are moderately halophilic bacteria that are studied as models of prokaryotic osmoadaptation and sources of enzymes and chemicals for biotechnological applications. Despite the progress in understand...

    Authors: Björn E. Olsson, Ekaterina S. Korsakova, Lyudmila N. Anan’ina, Anna A. Pyankova, Olga V. Mavrodi, Elena G. Plotnikova and Dmitri V. Mavrodi

    Citation: Standards in Genomic Sciences 2017 12:39

    Content type: Extended genome report

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  15. The genome of Leuconostoc suionicum DSM 20241T (=ATCC 9135T = LMG 8159T = NCIMB 6992T) was completely sequenced and its fermentative metabolic pathways were reconstructed to investigate the fermentative propertie...

    Authors: Byung Hee Chun, Se Hee Lee, Hye Hee Jeon, Dong-Woon Kim and Che Ok Jeon

    Citation: Standards in Genomic Sciences 2017 12:38

    Content type: Short genome report

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  16. Filamentous fungus Aspergillus niger has high industrial value due to their lignocellulolytic enzyme activities and ATCC 10864 is one of the few type strains of A. niger which has a unique biofilm forming capabil...

    Authors: Sujay Paul, Yvette Ludeña, Gretty K. Villena, Fengan Yu, David H. Sherman and Marcel Gutiérrez-Correa

    Citation: Standards in Genomic Sciences 2017 12:37

    Content type: Short genome report

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  17. Microbulbifer sp. CCB-MM1 is a halophile isolated from estuarine sediment of Matang Mangrove Forest, Malaysia. Based on 16S rRNA gene sequence analysis, strain CCB-MM1 is a potentially...

    Authors: Tsu Horng Moh, Nyok-Sean Lau, Go Furusawa and Al-Ashraf Abdullah Amirul

    Citation: Standards in Genomic Sciences 2017 12:36

    Content type: Genome report

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  18. Planktothricoides is a free-living filamentous cyanobacterium belonging to the order Oscillatoriales and the family Phormidiaceae, capable of forming bloom in fresh and brackish waters. A...

    Authors: Shu Harn Te, Boon Fei Tan, Chek Yin Boo, Janelle Renee Thompson and Karina Yew-Hoong Gin

    Citation: Standards in Genomic Sciences 2017 12:35

    Content type: Extended genome report

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  19. Desulfoplanes formicivorans strain Pf12BT is the type strain of the type species in the genus Desulfoplanes, which is the one of the genera in the family Desulfomicrobiaceae within the or...

    Authors: Miho Watanabe, Hisaya Kojima and Manabu Fukui

    Citation: Standards in Genomic Sciences 2017 12:34

    Content type: Short genome report

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  20. Escherichia coli causing infection outside the gastrointestinal system are referred to as extra-intestinal pathogenic E. coli. Avian pathogenic E. coli is a subgroup of extra-intestinal p...

    Authors: Steffen L. Jørgensen, Egle Kudirkiene, Lili Li, Jens P. Christensen, John E. Olsen, Lisa Nolan and Rikke H. Olsen

    Citation: Standards in Genomic Sciences 2017 12:33

    Content type: Short genome report

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  21. The genus Porphyrobacter belongs to aerobic anoxygenic phototrophic bacteria cluster. Porphyrobacter neustonensis DSM 9434 was isolated from a eutrophic freshwater pond in Australia, and is able to synthesize Bac...

    Authors: Qian Liu, Yue-Hong Wu, Hong Cheng, Lin Xu, Chun-Sheng Wang and Xue-Wei Xu

    Citation: Standards in Genomic Sciences 2017 12:32

    Content type: Short genome report

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  22. Chryseobacterium bovis DSM 19482T (Hantsis-Zacharov et al., Int J Syst Evol Microbiol 58:1024-1028, 2008) is a Gram-negative, rod shaped, non-motile, facultative anaerobe, chemoorganotrop...

    Authors: Sivan Laviad-Shitrit, Markus Göker, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Victor Markowitz, Natalia Ivanova, Tanja Woyke, Hans-Peter Klenk…

    Citation: Standards in Genomic Sciences 2017 12:31

    Content type: Short genome report

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  23. A nonmotile, Gram-positive bacterium that shows an elongated and branching cell shape was isolated from soil samples from the botanical garden of Ulm University, Ulm, Germany. Here, the isolation procedure, id...

    Authors: Vanessa Jag, Anja Poehlein, Frank R. Bengelsdorf, Rolf Daniel and Peter Dürre

    Citation: Standards in Genomic Sciences 2017 12:30

    Content type: Short genome report

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  24. Ralstonia solanacearum is an extremely destructive pathogen able to cause disease in a wide range of host plants. Here we report the draft genome sequences of the strains FJAT-91, FJAT-45...

    Authors: Yidan Sun, Keke Wang, Carlos Caceres-Moreno, Wei Jia, Aojun Chen, Heng Zhang, Renyi Liu and Alberto P. Macho

    Citation: Standards in Genomic Sciences 2017 12:29

    Content type: Extended genome report

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  25. Strain Ola 51T (=LMG 24251T = CGMCC 1.7012T) is the type strain of the species Kosakonia oryzae and was isolated from surface-sterilized roots of the wild rice species Oryza latifolia grown in Guangdong, China. H...

    Authors: Yuanyuan Li, Shuying Li, Mingyue Chen, Guixiang Peng, Zhiyuan Tan and Qianli An

    Citation: Standards in Genomic Sciences 2017 12:28

    Content type: Short genome report

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  26. The PacBio RS II provides for single molecule, real-time DNA technology to sequence genomes and detect DNA modifications. The starting point for high-quality sequence production is high molecular weight genomi...

    Authors: Nguyet Kong, Whitney Ng, Kao Thao, Regina Agulto, Allison Weis, Kristi Spittle Kim, Jonas Korlach, Luke Hickey, Lenore Kelly, Stephen Lappin and Bart C. Weimer

    Citation: Standards in Genomic Sciences 2017 12:27

    Content type: Standard operating procedure

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  27. Bradyrhizobium elkanii USDA 76T (INSCD = ARAG00000000), the type strain for Bradyrhizobium elkanii, is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an e...

    Authors: Wayne Reeve, Peter van Berkum, Julie Ardley, Rui Tian, Margaret Gollagher, Dora Marinova, Patrick Elia, T. B. K. Reddy, Manoj Pillay, Neha Varghese, Rekha Seshadri, Natalia Ivanova, Tanja Woyke, Mohamed N. Baeshen, Nabih A. Baeshen and Nikos Kyrpides

    Citation: Standards in Genomic Sciences 2017 12:26

    Content type: Extended genome report

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  29. Anaerobium acetethylicum strain GluBS11T belongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated ...

    Authors: Yogita Patil, Nicolai Müller, Bernhard Schink, William B. Whitman, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos Kyrpides…

    Citation: Standards in Genomic Sciences 2017 12:24

    Content type: Short genome report

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  30. Hexavalent Chromium [Cr(VI)] is a widespread contaminant found in soil, sediment, and ground water in several DOE sites, including Hanford 100 H area. In order to stimulate microbially mediated reduction of Cr...

    Authors: Romy Chakraborty, Hannah Woo, Paramvir Dehal, Robert Walker, Marcin Zemla, Manfred Auer, Lynne A. Goodwin, Alexey Kazakov, Pavel Novichkov, Adam P. Arkin and Terry C. Hazen

    Citation: Standards in Genomic Sciences 2017 12:23

    Content type: Short genome report

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  31. Thermus brockianus strain GE-1 is a thermophilic, Gram-negative, rod-shaped and non-motile bacterium that was isolated from the Geysir geothermal area, Iceland. Like other thermophiles, T...

    Authors: Christian Schäfers, Saskia Blank, Sigrid Wiebusch, Skander Elleuche and Garabed Antranikian

    Citation: Standards in Genomic Sciences 2017 12:22

    Content type: Extended genome report

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  32. Jiangella gansuensis strain YIM 002T is the type strain of the type species of the genus Jiangella, which is at the present time composed of five species, and was isolated from desert soi...

    Authors: Jian-Yu Jiao, Lorena Carro, Lan Liu, Xiao-Yang Gao, Xiao-Tong Zhang, Wael N. Hozzein, Alla Lapidus, Marcel Huntemann, T. B. K. Reddy, Neha Varghese, Michalis Hadjithomas, Natalia N. Ivanova, Markus Göker, Manoj Pillay, Jonathan A. Eisen, Tanja Woyke…

    Citation: Standards in Genomic Sciences 2017 12:21

    Content type: Short genome report

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  33. Pseudoalteromonas phage vB_PspS-H40/1 is a lytic phage that infects Pseudoalteromonas sp. strain H40. Both, the phage and its host were isolated in the 1970s from seawater samples collect...

    Authors: René Kallies, Bärbel Kiesel, Matthias Schmidt, Johannes Kacza, Nawras Ghanem, Anja Narr, Jakob Zopfi, Lukas Y. Wick, Jörg Hackermüller, Hauke Harms and Antonis Chatzinotas

    Citation: Standards in Genomic Sciences 2017 12:20

    Content type: Short genome report

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  34. The article provides an overview of the genomic features of Lactobacillus fermentum strain 3872. The genomic sequence reported here is one of three L. fermentum genome sequences completed to date. Comparative gen...

    Authors: Burhan Lehri, Alan M. Seddon and Andrey V. Karlyshev

    Citation: Standards in Genomic Sciences 2017 12:19

    Content type: Extended genome report

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  35. Streptococcus thermophilus ACA-DC 2 is a newly sequenced strain isolated from traditional Greek yogurt. Among the 14 fully sequenced strains of S. thermophilus currently deposited in the ...

    Authors: Voula Alexandraki, Maria Kazou, Jochen Blom, Bruno Pot, Effie Tsakalidou and Konstantinos Papadimitriou

    Citation: Standards in Genomic Sciences 2017 12:18

    Content type: Extended genome report

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  36. We report here the draft genome sequences of eight bacterial strains of the genera Staphylococcus, Microbacterium, Mycobacterium, Plantibacter, and Pseudomonas. These isolates were obtained from aerosol sampling ...

    Authors: Despoina S. Lymperopoulou, David A. Coil, Denise Schichnes, Steven E. Lindow, Guillaume Jospin, Jonathan A. Eisen and Rachel I. Adams

    Citation: Standards in Genomic Sciences 2017 12:17

    Content type: Extended genome report

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  37. The genomes of four strains (MB11, MB14, MB30, and MB66) of the species Corynebacterium pseudotuberculosis biovar equi were sequenced on the Ion Torrent PGM platform, completely assembled, and their gene content ...

    Authors: Rafael A. Baraúna, Rommel T. J. Ramos, Adonney A. O. Veras, Pablo H. C. G. de Sá, Luís C. Guimarães, Diego A. das Graças, Adriana R. Carneiro, Judy M. Edman, Sharon J. Spier, Vasco Azevedo and Artur Silva

    Citation: Standards in Genomic Sciences 2017 12:16

    Content type: Short genome report

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  38. Probiotic Lactobacillus species offer various health benefits, thus have been employed in treatment and prevention of various diseases. Due to the differences in the isolation source and the site of action, most ...

    Authors: Mangesh V. Suryavanshi, Dhiraj Paul, Swapnil P. Doijad, Shrikant S. Bhute, Tejashri B. Hingamire, Rahul P. Gune and Yogesh S. Shouche

    Citation: Standards in Genomic Sciences 2017 12:15

    Content type: Extended genome report

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  39. Rhizobium aethiopicum sp. nov. is a newly proposed species within the genus Rhizobium. This species includes six rhizobial strains; which were isolated from root nodules of the legume pla...

    Authors: Aregu Amsalu Aserse, Tanja Woyke, Nikos C. Kyrpides, William B. Whitman and Kristina Lindström

    Citation: Standards in Genomic Sciences 2017 12:14

    Content type: Extended genome report

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  42. Arthrobacter sp. B6 is a Gram-positive, non-motile, facultative aerobic bacterium, isolated from the arsenic-contaminated aquifer sediment in the Datong basin, China. This strain displays...

    Authors: Linghua Xu, Wanxia Shi, Xian-Chun Zeng, Ye Yang, Lingli Zhou, Yao Mu and Yichen Liu

    Citation: Standards in Genomic Sciences 2017 12:11

    Content type: Short genome report

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  43. Thiobacillus thioparus DSM 505T is one of first two isolated strains of inorganic sulfur-oxidising Bacteria. The original strain of T. thioparus was lost almost 100 years ago and the work...

    Authors: Lee P. Hutt, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, Tatiparthi Reddy, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos Kyrpides, Tanja Woyke and Rich Boden

    Citation: Standards in Genomic Sciences 2017 12:10

    Content type: Short genome report

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  44. Here we report three complete bacterial genome assemblies from a PacBio shotgun metagenome of a co-culture from Upper Klamath Lake, OR. Genome annotations and culture conditions indicate these bacteria are dep...

    Authors: Connor B. Driscoll, Timothy G. Otten, Nathan M. Brown and Theo W. Dreher

    Citation: Standards in Genomic Sciences 2017 12:9

    Content type: Extended genome report

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  45. Strain S3-2T, isolated from sediment of a frozen freshwater pond, shares 99% 16S rRNA gene sequence identity with strains of the genus Janthinobacterium. Strain S3-2T is a facultative anaerobe that lacks the abil...

    Authors: Xianzhe Gong, Stig Skrivergaard, Benjamin Smed Korsgaard, Lars Schreiber, Ian P. G. Marshall, Kai Finster and Andreas Schramm

    Citation: Standards in Genomic Sciences 2017 12:8

    Content type: Short genome report

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  46. Rhizobium mesoamericanum STM6155 (INSCD = ATYY01000000) is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as an effective nitrogen fixing ...

    Authors: Agnieszka Klonowska, Aline López-López, Lionel Moulin, Julie Ardley, Margaret Gollagher, Dora Marinova, Rui Tian, Marcel Huntemann, T.B.K. Reddy, Neha Varghese, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Rekha Seshadri, Mohamed N. Baeshen, Nabih A. Baeshen…

    Citation: Standards in Genomic Sciences 2017 12:7

    Content type: Extended genome report

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  47. Pseudomonas brassicacearum strain L13-6-12 is a rhizosphere colonizer of potato, lettuce and sugar beet. Previous studies have shown that this motile, Gram-negative, non-sporulating bacte...

    Authors: Christin Zachow, Henry Müller, Jana Monk and Gabriele Berg

    Citation: Standards in Genomic Sciences 2017 12:6

    Content type: Short genome report

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  48. Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki’s Castle vent field, located on the A...

    Authors: Juliane Wissuwa, Sven Le Moine Bauer, Ida Helene Steen and Runar Stokke

    Citation: Standards in Genomic Sciences 2017 12:5

    Content type: Short genome report

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  49. Nakamurella lactea DLS-10T , isolated from rock in Korea, is one of the four type strains of the genus Nakamurella. In this study, we describe the high quality dra...

    Authors: Imen Nouioui, Markus Göker, Lorena Carro, Maria del Carmen Montero-Calasanz, Manfred Rohde, Tanja Woyke, Nikos C. Kyrpides and Hans-Peter Klenk

    Citation: Standards in Genomic Sciences 2017 12:4

    Content type: Short genome report

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  50. Salmonella enterica serovar Enteritidis is one of the most common causes of Salmonellosis worldwide. Utilization of bacteriophages as prophylactic agents is a practical solution to preven...

    Authors: Javier Santander, Jose I. Vasquez, Cristopher Segovia, Leonardo Santos, Gabriel Turra, Karen Huber and James Robeson

    Citation: Standards in Genomic Sciences 2017 12:1

    Content type: Short genome report

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  • ISSN: 2524-6372 (electronic)

Environmental Microbiome

ISSN: 2524-6372