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  1. Stackebrandtia nassauensis Labeda and Kroppenstedt (2005) is the type species of the genus Stackebrandtia, and a member of the actinobacterial family Glycomycetaceae. Stackebrandtia currently contains two species...

    Authors: Chris Munk, Alla Lapidus, Alex Copeland, Marlen Jando, Shanmugam Mayilraj, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain…
    Citation: Standards in Genomic Sciences 2009 1:1030292
    Content type: OriginalPaper Published on:

  2. Rhodothermus marinus Alfredsson et al. 1995 is the type species of the genus and is of phylogenetic interest because the Rhodothermaceae represent the deepest lineage in the phylum Bacteroidetes. R. marinus R-10T

    Authors: Matt Nolan, Brian J. Tindall, Helga Pomrenke, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, Cliff Han, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck…
    Citation: Standards in Genomic Sciences 2009 1:1030283
    Content type: OriginalPaper Published on:

  3. Jonesia denitrificans (Prevot 1961) Rocourt et al. 1987 is the type species of the genus Jonesia, and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. J...

    Authors: Rüdiger Pukall, Gabriele Gehrich-Schröter, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Alex Copeland, Elizabeth Saunders, Thomas Brettin, John C. Detter, David Bruce, Lynne Goodwin…
    Citation: Standards in Genomic Sciences 2009 1:1030262
    Content type: OriginalPaper Published on:

  4. Halorhabdus utahensis Wainø et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Hal...

    Authors: Iain Anderson, Brian J. Tindall, Helga Pomrenke, Markus Göker, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Feng Chen, Hope Tice, Jan-Fang Cheng, Susan Lucas, Olga Chertkov, David Bruce, Thomas Brettin, John C. Detter…
    Citation: Standards in Genomic Sciences 2009 1:1030218
    Content type: OriginalPaper Published on:

  6. We present an interactive web application for visualizing genomic data of prokaryotic chromosomes. The tool (GeneWiz browser) allows users to carry out various analyses such as mapping alignments of homologous...

    Authors: Peter F. Hallin, Hans-Henrik Stærfeldt, Eva Rotenberg, Tim T. Binnewies, Craig J. Benham and David W. Ussery
    Citation: Standards in Genomic Sciences 2009 1:1020204
    Content type: OriginalPaper Published on:

  7. Methanocorpusculum labreanum is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain Z was isolated from surface sediments of Tar Pit Lake in the La Bre...

    Authors: Iain J. Anderson, Magdalena Sieprawska-Lupa, Eugene Goltsman, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Kerrie Barry, Sam Pitluck, Loren Hauser, Miriam Land, Susan Lucas, Paul Richardson, William B. Whitman and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2009 1:1020197
    Content type: OriginalPaper Published on:

  8. Methanoculleus marisnigri Romesser et al. 1981 is a methanogen belonging to the order Methanomicrobiales within the archaeal phylum Euryarchaeota. The type strain, JR1, was isolated from anoxic sediments of the B...

    Authors: Iain J. Anderson, Magdalena Sieprawska-Lupa, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Kerrie Barry, Elizabeth Saunders, Cliff Han, Thomas Brettin, John C. Detter, David Bruce, Natalia Mikhailova, Sam Pitluck…
    Citation: Standards in Genomic Sciences 2009 1:1020189
    Content type: OriginalPaper Published on:

  9. Staphylothermus marinus Fiala and Stetter 1986 belongs to the order Desulfurococcales within the archaeal phylum Crenarchaeota. S. marinus is a hyperthermophilic, sulfur-dependent, anaerobic heterotroph. Strain F...

    Authors: Iain J. Anderson, Hui Sun, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Hope Tice, Eileen Dalin, Susan Lucas, Kerrie Barry, Miriam Land, Paul Richardson, Harald Huber and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2009 1:1020183
    Content type: OriginalPaper Published on:

  10. Eggerthella lenta (Eggerth 1935) Wade et al. 1999, emended Würdemann et al. 2009 is the type species of the genus Eggerthella, which belongs to the actinobacterial family Coriobacteriaceae. E. lenta is a Gram-pos...

    Authors: Elizabeth Saunders, Rüdiger Pukall, Birte Abt, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis…
    Citation: Standards in Genomic Sciences 2009 1:1020174
    Content type: OriginalPaper Published on:

  11. Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteri...

    Authors: Alex Copeland, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Rüdiger Pukall, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske…
    Citation: Standards in Genomic Sciences 2009 1:1020166
    Content type: OriginalPaper Published on:

    The Erratum to this article has been published in Standards in Genomic Sciences 2010 2:Art12

  12. Anaerococcus prevotii (Foubert and Douglas 1948) Ezaki et al. 2001 is the type species of the genus, and is of phylogenetic interest because of its arguable assignment to the provisionally arranged family ‘Peptos...

    Authors: Kurt LaButti, Rüdiger Pukall, Katja Steenblock, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova…
    Citation: Standards in Genomic Sciences 2009 1:1020159
    Content type: OriginalPaper Published on:

  13. Halogeometricum borinquense Montalvo-Rodríguez et al. 1998 is the type species of the genus, and is of phylogenetic interest because of its distinct location between the halobacterial genera Haloquadratum and Hal...

    Authors: Stephanie Malfatti, Brian J. Tindall, Susanne Schneider, Regine Fähnrich, Alla Lapidus, Kurt LaButtii, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck…
    Citation: Standards in Genomic Sciences 2009 1:1020150
    Content type: OriginalPaper Published on:

  14. Saccharomonospora viridis (Schuurmans et al. 1956) Nonomurea and Ohara 1971 is the type species of the genus Saccharomonospora which belongs to the family Pseudonocardiaceae. S. viridis is of interest because it ...

    Authors: Amrita Pati, Johannes Sikorski, Matt Nolan, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, Cheryl Kuske…
    Citation: Standards in Genomic Sciences 2009 1:1020141
    Content type: OriginalPaper Published on:

  15. Dyadobacter fermentans (Chelius and Triplett, 2000) is the type species of the genus Dyadobacter. It is of phylogenetic interest because of its location in the Cytophagaceae, a very diverse family within the orde...

    Authors: Elke Lang, Alla Lapidus, Olga Chertkov, Thomas Brettin, John C. Detter, Cliff Han, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Miriam Land, Loren Hauser, Yun-Juan Chang…
    Citation: Standards in Genomic Sciences 2009 1:1020133
    Content type: OriginalPaper Published on:

  16. Leptotrichia buccalis (Robin 1853) Trevisan 1879 is the type species of the genus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomica...

    Authors: Natalia Ivanova, Sabine Gronow, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Thomas Brettin, John C. Detter, Cliff Han…
    Citation: Standards in Genomic Sciences 2009 1:1020126
    Content type: OriginalPaper Published on:

  17. Catenulispora acidiphila Busti et al. 2006 is the type species of the genus Catenulispora, and is of interest because of the rather isolated phylogenetic location it occupies within the scarcely explored suborder...

    Authors: Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Mikhailova, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Amy Chen…
    Citation: Standards in Genomic Sciences 2009 1:1020119
    Content type: OriginalPaper Published on:

  18. Sanguibacter keddieii is the type species of the genus Sanguibacter, the only genus within the family of Sanguibacteraceae. Phylogenetically, this family is located in the neighborhood of the genus Oerskovia and ...

    Authors: Natalia Ivanova, Johannes Sikorski, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin…
    Citation: Standards in Genomic Sciences 2009 1:1020110
    Content type: OriginalPaper Published on:

  19. Capnocytophaga ochracea (Prévot et al. 1956) Leadbetter et al. 1982 is the type species of the genus Capnocytophaga. It is of interest because of its location in the Flavobacteriaceae, a genomically not yet chart...

    Authors: Konstantinos Mavrommatis, Sabine Gronow, Elizabeth Saunders, Miriam Land, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati…
    Citation: Standards in Genomic Sciences 2009 1:1020101
    Content type: OriginalPaper Published on:

  20. Cryptobacterium curtum Nakazawa et al. 1999 is the type species of the genus, and is of phylogenetic interest because of its very distant and isolated position within the family Coriobacteriaceae. C. curtum is an...

    Authors: Konstantinos Mavrommatis, Rüdiger Pukall, Christine Rohde, Feng Chen, David Sims, Thomas Brettin, Cheryl Kuske, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng…
    Citation: Standards in Genomic Sciences 2009 1:1020093
    Content type: OriginalPaper Published on:

  22. Through a newly established Research Coordination Network for the Genomic Standards Consortium (RCN4GSC), the GSC will continue its leadership in establishing and integrating genomic standards through communit...

    Authors: John C. Wooley, Dawn Field and Frank-Oliver Glöckner
    Citation: Standards in Genomic Sciences 2009 1:1010087
    Content type: OriginalPaper Published on:

  23. The principles underlying fair and equitable sharing of benefits derived from the utilization of genetic resources are set out in Article 15 of the UN Convention on Biological Diversity, which stipulate that a...

    Authors: George M. Garrity, Lorraine M. Thompson, David W. Ussery, Norman Paskin, Dwight Baker, Philippe Desmeth, D. E. Schindel and P. S. Ong
    Citation: Standards in Genomic Sciences 2009 1:1010078
    Content type: OriginalPaper Published on:

  25. This report summarizes the proceedings of the 6th and 7th workshops of the Genomic Standards Consortium (GSC), held back-to-back in 2008. GSC 6 focused on furthering the activities of GSC working groups, GSC 7...

    Authors: Dawn Field, Peter Sterk, Nikos Kyrpides, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M. Garrity, John Wooley and Paul Gilna
    Citation: Standards in Genomic Sciences 2009 1:1010068
    Content type: OriginalPaper Published on:

  26. The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome [1] (IMG) syste...

    Authors: Konstantinos Mavromatis, Natalia N. Ivanova, I-Min A. Chen, Ernest Szeto, Victor M. Markowitz and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2009 1:1010063
    Content type: OriginalPaper Published on:

  27. Pedobacter heparinus (Payza and Korn 1956) Steyn et al. 1998 comb. nov. is the type species of the rapidly growing genus Pedobacter within the family Sphingobacteriaceae of the phylum ‘Bacteroidetes’. P. heparinu...

    Authors: Cliff Han, Stefan Spring, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova…
    Citation: Standards in Genomic Sciences 2009 1:1010054
    Content type: OriginalPaper Published on:

  28. Actinosynnema mirum Hasegawa et al. 1978 is the type species of the genus, and is of phylogenetic interest because of its central phylogenetic location in the Actinosynnemataceae, a rapidly growing family within ...

    Authors: Miriam Land, Alla Lapidus, Shanmugam Mayilraj, Feng Chen, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker…
    Citation: Standards in Genomic Sciences 2009 1:1010046
    Content type: OriginalPaper Published on:

  29. Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the genus, which until recently was the only genus within the actinobacterial family Acidimicrobiaceae and in the order Acidomic...

    Authors: Alicia Clum, Matt Nolan, Elke Lang, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati…
    Citation: Standards in Genomic Sciences 2009 1:1010038
    Content type: OriginalPaper Published on:

  30. Desulfomicrobium baculatum is the type species of the genus Desulfomicrobium, which is the type genus of the family Desulfomicrobiaceae. It is of phylogenetic interest because of the isolated location of the fami...

    Authors: Alex Copeland, Stefan Spring, Markus Göker, Susanne Schneider, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis…
    Citation: Standards in Genomic Sciences 2009 1:1010029
    Content type: OriginalPaper Published on:

  31. Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122T is...

    Authors: Miriam Land, Rüdiger Pukall, Birte Abt, Markus Göker, Manfred Rohde, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova…
    Citation: Standards in Genomic Sciences 2009 1:1010021
    Content type: OriginalPaper Published on:

  32. Kytococcus sedentarius (ZoBell and Upham 1944) Stackebrandt et al. 1995 is the type strain of the species, and is of phylogenetic interest because of its location in the Dermacoccaceae, a poorly studied family wi...

    Authors: David Sims, Thomas Brettin, John C. Detter, Cliff Han, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova…
    Citation: Standards in Genomic Sciences 2009 1:1010012
    Content type: OriginalPaper Published on:

  33. Brachybacterium faecium Collins et al. 1988 is the type species of the genus, and is of phylogenetic interest because of its location in the Dermabacteraceae, a rather isolated family within the actinobacterial s...

    Authors: Alla Lapidus, Rüdiger Pukall, Kurt LaButtii, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Sam Pitluck, Manfred Rohde, Markus Göker, Amrita Pati…
    Citation: Standards in Genomic Sciences 2009 1:1010003
    Content type: OriginalPaper Published on:

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Environmental Microbiome

ISSN: 2524-6372