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  1. Authors: Alex Copeland, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Rüdiger Pukall, Olga Chertkov, Thomas Brettin, Cliff Han, Cheryl Kuske, David Bruce…

    Citation: Standards in Genomic Sciences 2010 2:2030361

    Content type: Erratum

    Published on:

    The original article was published in Standards in Genomic Sciences 2009 1:1020166

  2. This report summarizes the M3 Workshop held at the January 2010 Pacific Symposium on Biocomputing. The workshop, organized by Genomic Standards Consortium members, included five contributed talks, a series of ...

    Authors: Lynette Hirschman, Peter Sterk, Dawn Field, John Wooley, Guy Cochrane, Jack Gilbert, Eugene Kolker, Nikos Kyrpides, Folker Meyer, Ilene Mizrachi, Yasukazu Nakamura, Susanna-Assunta Sansone, Lynn Schriml, Tatiana Tatusova, Owen White and Pelin Yilmaz

    Citation: Standards in Genomic Sciences 2010 2:2030357

    Content type: Report

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  3. Rhizobium leguminosarum bv trifolii is a soil-inhabiting bacterium that has the capacity to be an effective nitrogen fixing microsymbiont of a diverse range of annual Trifolium (clover) species. Strain WSM1325 is...

    Authors: Wayne Reeve, Graham O’Hara, Patrick Chain, Julie Ardley, Lambert Bräu, Kemanthi Nandesena, Ravi Tiwari, Alex Copeland, Matt Nolan, Cliff Han, Thomas Brettin, Miriam Land, Galina Ovchinikova, Natalia Ivanova, Konstantinos Mavromatis, Victor Markowitz…

    Citation: Standards in Genomic Sciences 2010 2:2030347

    Content type: OriginalPaper

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  4. Archaeoglobus profundus (Burggraf et al. 1990) is a hyperthermophilic archaeon in the euryarchaeal class Archaeoglobi, which is currently represented by the single family Archaeoglobaceae, containing six validly ...

    Authors: Mathias von Jan, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, Lynne Goodwin, Cliff Han, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2010 2:2030327

    Content type: OriginalPaper

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  5. Thermobispora bispora (Henssen 1957) Wang et al. 1996 is the type species of the genus Thermobispora. This genus is of great interest because it is strictly thermophilic and because it has been shown for several ...

    Authors: Konstantinos Liolios, Johannes Sikorski, Marlen Jando, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, Tanja Woyke, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2010 2:2030318

    Content type: OriginalPaper

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  6. Gluconacetobacter diazotrophicus PAl 5 is of agricultural significance due to its ability to provide fixed nitrogen to plants. Consequently, its genome sequence has been eagerly anticipated to enhance understandi...

    Authors: Adriana Giongo, Heather L. Tyler, Ursula N. Zipperer and Eric W. Triplett

    Citation: Standards in Genomic Sciences 2010 2:2030309

    Content type: OriginalPaper

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  7. Arcobacter nitrofigilis (McClung et al. 1983) Vandamme et al. 1991 is the type species of the genus Arcobacter in the family Campylobacteraceae within the Epsilonproteobacteria. The species was first described in...

    Authors: Amrita Pati, Sabine Gronow, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, Olga Chertkov, David Bruce, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios…

    Citation: Standards in Genomic Sciences 2010 2:2030300

    Content type: OriginalPaper

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  8. Coraliomargarita akajimensis Yoon et al. 2007 is the type species of the genus Coraliomargarita. C. akajimensis is an obligately aerobic, Gram-negative, non-spore-forming, non-motile, spherical bacterium that was...

    Authors: Konstantinos Mavromatis, Birte Abt, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Shweta Deshpande, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, Tanja Woyke, Lynne Goodwin, Sam Pitluck, Brittany Held…

    Citation: Standards in Genomic Sciences 2010 2:2030290

    Content type: OriginalPaper

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  9. Aminobacterium colombiense Baena et al. 1999 is the type species of the genus Aminobacterium. This genus is of large interest because of its isolated phylogenetic location in the family Synergistaceae, its strict...

    Authors: Olga Chertkov, Johannes Sikorski, Evelyne Brambilla, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Roxanne Tapia, Lynne Goodwin, Sam Pitluck…

    Citation: Standards in Genomic Sciences 2010 2:2030280

    Content type: OriginalPaper

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  10. Denitrovibrio acetiphilus Myhr and Torsvik 2000 is the type species of the genus Denitrovibrio in the bacterial family Deferribacteraceae. It is of phylogenetic interest because there are only six genera describe...

    Authors: Hajnalka Kiss, Elke Lang, Alla Lapidus, Alex Copeland, Matt Nolan, Tijana Glavina Del Rio, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Amrita Pati, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2010 2:2030270

    Content type: OriginalPaper

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  11. Brachyspira murdochii Stanton et al. 1992 is a non-pathogenic, host-associated spirochete of the family Brachyspiraceae. Initially isolated from the intestinal content of a healthy swine, the ‘group B spirochaete...

    Authors: Amrita Pati, Johannes Sikorski, Sabine Gronow, Christine Munk, Alla Lapidus, Alex Copeland, Tijana Glavina Del Tio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Roxanne Tapia…

    Citation: Standards in Genomic Sciences 2010 2:2030260

    Content type: OriginalPaper

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  12. Thermosphaera aggregans Huber et al. 1998 is the type species of the genus Thermosphaera, which comprises at the time of writing only one species. This species represents archaea with a hyperthermophilic, heterot...

    Authors: Stefan Spring, Reinhard Rachel, Alla Lapidus, Karen Davenport, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2010 2:2030245

    Content type: OriginalPaper

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  13. Quantitative or numerical metrics of protein function specificity made possible by the Gene Ontology are useful in that they enable development of distance or similarity measures between protein functions. Her...

    Authors: Brenton Louie, Silas Bergen, Roger Higdon and Eugene Kolker

    Citation: Standards in Genomic Sciences 2010 2:2020238

    Content type: OriginalPaper

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  14. The JCVI metagenomics analysis pipeline provides for the efficient and consistent annotation of shotgun metagenomics sequencing data for sampling communities of prokaryotic organisms. The process can be equall...

    Authors: David M. Tanenbaum, Johannes Goll, Sean Murphy, Prateek Kumar, Nikhat Zafar, Mathangi Thiagarajan, Ramana Madupu, Tanja Davidsen, Leonid Kagan, Saul Kravitz, Douglas B. Rusch and Shibu Yooseph

    Citation: Standards in Genomic Sciences 2010 2:2020229

    Content type: OriginalPaper

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  15. Authors: Alicia Clum, Brian J. Tindall, Johannes Sikorski, Natalia Ivanova, Konstantinos Mavromatis, Susan Lucas, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter…

    Citation: Standards in Genomic Sciences 2010 2:2020228

    Content type: Erratum

    Published on:

    The original article was published in Standards in Genomic Sciences 2009 1:1030308

  16. Sebaldella termitidis (Sebald 1962) Collins and Shah 1986, is the only species in the genus Sebaldella within the fusobacterial family ‘Leptotrichiaceae’. The sole and type strain of the species was first isolate...

    Authors: Miranda Harmon-Smith, Laura Celia, Olga Chertkov, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati…

    Citation: Standards in Genomic Sciences 2010 2:2020220

    Content type: OriginalPaper

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  17. The genus Conexibacter (Monciardini et al. 2003) represents the type genus of the family Conexibacteraceae (Stackebrandt 2005, emend. Zhi et al. 2009) with Conexibacter woesei as the type species of the genus. C....

    Authors: Rüdiger Pukall, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Konstantinos Mavromatis, Natalia Ivanova, Galina Ovchinnikova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2010 2:2020212

    Content type: OriginalPaper

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  18. Segniliparus rotundus Butler 2005 is the type species of the genus Segniliparus, which is currently the only genus in the corynebacterial family Segniliparaceae. This family is of large interest because of a nove...

    Authors: Johannes Sikorski, Alla Lapidus, Alex Copeland, Monica Misra, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Marlen Jando, Susanne Schneider, David Bruce, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios…

    Citation: Standards in Genomic Sciences 2010 2:2020203

    Content type: OriginalPaper

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  19. Thermocrinis albus Eder and Huber 2002 is one of three species in the genus Thermocrinis in the family Aquificaceae. Members of this family have become of significant interest because of their involvement in glob...

    Authors: Reinhard Wirth, Johannes Sikorski, Evelyne Brambilla, Monica Misra, Alla Lapidus, Alex Copeland, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, Roxane Tapia, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2010 2:2020194

    Content type: OriginalPaper

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  20. The genus Kribbella consists of 15 species, with Kribbella flavida (Park et al. 1999) as the type species. The name Kribbella was formed from the acronym of the Korea Research Institute of Bioscience and Biotechn...

    Authors: Rüdiger Pukall, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, Kurt LaButti, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Sam Pitluck, David Bruce…

    Citation: Standards in Genomic Sciences 2010 2:2020186

    Content type: OriginalPaper

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  21. Spirosoma linguale Migula 1894 is the type species of the genus. S. linguale is a free-living and non-pathogenic organism, known for its peculiar ringlike and horseshoe-shaped cell morphology. Here we describe th...

    Authors: Kathleen Lail, Johannes Sikorski, Elizabeth Saunders, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2010 2:2020176

    Content type: OriginalPaper

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  22. Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004 is the type species of the monospecific genus Nakamurella in the actinobacterial suborder Frankineae. The nonmotile, coccus-shaped strain was isolate...

    Authors: Hope Tice, Shanmugam Mayilraj, David Sims, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Alex Copeland, Jan-Fang Cheng, Linda Meincke, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2010 2:2020168

    Content type: OriginalPaper

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  23. Geodermatophilus obscurus Luedemann 1968 is the type species of the genus, which is the type genus of the family Geodermatophilaceae. G. obscurus is of interest as it has frequently been isolated from stressful e...

    Authors: Natalia Ivanova, Johannes Sikorski, Marlen Jando, Christine Munk, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2010 2:2020158

    Content type: OriginalPaper

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  24. Sulfurospirillum deleyianum Schumacher et al. 1993 is the type species of the genus Sulfurospirillum. S. deleyianum is a model organism for studying sulfur reduction and dissimilatory nitrate reduction as an ener...

    Authors: Johannes Sikorski, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Sam Pitluck, Galina Ovchinnikova, Amrita Pati, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2010 2:2020149

    Content type: OriginalPaper

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  25. DNA-DNA hybridization (DDH) is a widely applied wet-lab technique to obtain an estimate of the overall similarity between the genomes of two organisms. To base the species concept for prokaryotes ultimately on...

    Authors: Alexander F. Auch, Hans-Peter Klenk and Markus Göker

    Citation: Standards in Genomic Sciences 2010 2:2010142

    Content type: OriginalPaper

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  26. We present the pan-genome tree as a tool for visualizing similarities and differences between closely related microbial genomes within a species or genus. Distance between genomes is computed as a weighted rel...

    Authors: Lars Snipen and David W. Ussery

    Citation: Standards in Genomic Sciences 2010 2:2010135

    Content type: OriginalPaper

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  27. The pragmatic species concept for Bacteria and Archaea is ultimately based on DNA-DNA hybridization (DDH). While enabling the taxonomist, in principle, to obtain an estimate of the overall similarity between the ...

    Authors: Alexander F. Auch, Mathias von Jan, Hans-Peter Klenk and Markus Göker

    Citation: Standards in Genomic Sciences 2010 2:2010117

    Content type: OriginalPaper

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  28. Haloterrigena turkmenica (Zvyagintseva and Tarasov 1987) Ventosa et al. 1999, comb. nov. is the type species of the genus Haloterrigena in the euryarchaeal family Halobacteriaceae. It is of phylogenetic interest ...

    Authors: Elisabeth Saunders, Brian J. Tindall, Regine Fähnrich, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck…

    Citation: Standards in Genomic Sciences 2010 2:2010107

    Content type: OriginalPaper

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  29. Haliangium ochraceum Fudou et al. 2002 is the type species of the genus Haliangium in the myxococcal family ‘Haliangiaceae’. Members of the genus Haliangium are the first halophilic myxobacterial taxa described. ...

    Authors: Natalia Ivanova, Chris Daum, Elke Lang, Birte Abt, Markus Kopitz, Elizabeth Saunders, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2010 2:2010096

    Content type: OriginalPaper

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  30. Chitinophaga pinensis Sangkhobol and Skerman 1981 is the type strain of the species which is the type species of the rapidly growing genus Chitinophaga in the sphingobacterial family ‘Chitinophagaceae’. Members o...

    Authors: Tijana Glavina Del Rio, Birte Abt, Stefan Spring, Alla Lapidus, Matt Nolan, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2010 2:2010087

    Content type: OriginalPaper

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  31. Ensifer (Sinorhizobium) medicae is an effective nitrogen fixing microsymbiont of a diverse range of annual Medicago (medic) species. Strain WSM419 is an aerobic, motile, non-spore forming, Gram-negative rod isola...

    Authors: Wayne Reeve, Patrick Chain, Graham O’Hara, Julie Ardley, Kemanthi Nandesena, Lambert Bräu, Ravi Tiwari, Stephanie Malfatti, Hajnalka Kiss, Alla Lapidus, Alex Copeland, Matt Nolan, Miriam Land, Loren Hauser, Yun-Juan Chang, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2010 2:2010077

    Content type: OriginalPaper

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  32. Rhizobium leguminosarum bv trifolii is the effective nitrogen fixing microsymbiont of a diverse range of annual and perennial Trifolium (clover) species. Strain WSM2304 is an aerobic, motile, non-spore forming, G...

    Authors: Wayne Reeve, Graham O’Hara, Patrick Chain, Julie Ardley, Lambert Bräu, Kemanthi Nandesena, Ravi Tiwari, Stephanie Malfatti, Hajnalka Kiss, Alla Lapidus, Alex Copeland, Matt Nolan, Miriam Land, Natalia Ivanova, Konstantinos Mavromatis, Victor Markowitz…

    Citation: Standards in Genomic Sciences 2010 2:2010066

    Content type: OriginalPaper

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  33. Veillonella parvula (Veillon and Zuber 1898) Prévot 1933 is the type species of the genus Veillonella in the family Veillonellaceae within the order Clostridiales. The species V. parvula is of interest because it...

    Authors: Sabine Gronow, Sabine Welnitz, Alla Lapidus, Matt Nolan, Natalia Ivanova, Tijana Glavina Del Rio, Alex Copeland, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Elizabeth Saunders, Thomas Brettin, Cliff Han, John C. Detter, David Bruce…

    Citation: Standards in Genomic Sciences 2010 2:2010057

    Content type: OriginalPaper

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  34. Sphaerobacter thermophilus Demharter et al. 1989 is the sole and type species of the genus Sphaerobacter, which is the type genus of the family Sphaerobacteraceae, the order Sphaerobacterales and the subclass Sph...

    Authors: Amrita Pati, Kurt LaButti, Rüdiger Pukall, Matt Nolan, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Alex Copeland, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Sam Pitluck, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2010 2:2010049

    Content type: OriginalPaper

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  35. Desulfohalobium retbaense (Ollivier et al. 1991) is the type species of the polyphyletic genus Desulfohalobium, which comprises, at the time of writing, two species and represents the family Desulfohalobiaceae wi...

    Authors: Stefan Spring, Matt Nolan, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Miriam Land, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2010 2:2010038

    Content type: OriginalPaper

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  36. Streptosporangium roseum Crauch 1955 is the type strain of the species which is the type species of the genus Streptosporangium. The ‘pinkish coiled Streptomyces-like organism with a spore case’ was isolated from...

    Authors: Matt Nolan, Johannes Sikorski, Marlen Jando, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, David Sims, Linda Meincke, Thomas Brettin, Cliff Han, John C. Detter…

    Citation: Standards in Genomic Sciences 2010 2:2010029

    Content type: OriginalPaper

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  37. Gordonia bronchialis Tsukamura 1971 is the type species of the genus. G. bronchialis is a human-pathogenic organism that has been isolated from a large variety of human tissues. Here we describe the features of t...

    Authors: Natalia Ivanova, Johannes Sikorski, Marlen Jando, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Konstantinos Mavromatis, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2010 2:2010019

    Content type: OriginalPaper

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  38. Alicyclobacillus acidocaldarius (Darland and Brock 1971) is the type species of the larger of the two genera in the bacillal family ‘Alicyclobacillaceae’. A. acidocaldarius is a free-living and non-pathogenic org...

    Authors: Konstantinos Mavromatis, Johannes Sikorski, Alla Lapidus, Tijana Glavina Del Rio, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinnikova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2010 2:2010009

    Content type: OriginalPaper

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  39. Xylanimonas cellulosilytica Rivas et al. 2003 is the type species of the genus Xylanimonas of the actinobacterial family Promicromonosporaceae. The species X. cellulosilytica is of interest because of its ability...

    Authors: Brian Foster, Rüdiger Pukall, Birte Abt, Matt Nolan, Tijana Glavina Del Rio, Feng Chen, Susan Lucas, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2010 2:2010001

    Content type: OriginalPaper

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  40. Pirellula staleyi Schlesner and Hirsch 1987 is the type species of the genus Pirellula of the family Planctomycetaceae. Members of this pear- or teardrop-shaped bacterium show a clearly visible pointed attachment...

    Authors: Alicia Clum, Brian J. Tindall, Johannes Sikorski, Natalia Ivanova, Konstantinos Mavrommatis, Susan Lucas, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Olga Chertkov, Thomas Brettin, Cliff Han, John C. Detter…

    Citation: Standards in Genomic Sciences 2009 1:1030308

    Content type: OriginalPaper

    Published on:

    The Erratum to this article has been published in Standards in Genomic Sciences 2010 2:2020228

  41. Streptobacillus moniliformis Levaditi et al. 1925 is the type and sole species of the genus Streptobacillus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither ...

    Authors: Matt Nolan, Sabine Gronow, Alla Lapidus, Natalia Ivanova, Alex Copeland, Susan Lucas, Tijana Glavina Del Rio, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, David Sims, Linda Meincke, David Bruce, Lynne Goodwin, Thomas Brettin…

    Citation: Standards in Genomic Sciences 2009 1:1030300

    Content type: OriginalPaper

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  42. Stackebrandtia nassauensis Labeda and Kroppenstedt (2005) is the type species of the genus Stackebrandtia, and a member of the actinobacterial family Glycomycetaceae. Stackebrandtia currently contains two species...

    Authors: Chris Munk, Alla Lapidus, Alex Copeland, Marlen Jando, Shanmugam Mayilraj, Tijana Glavina Del Rio, Matt Nolan, Feng Chen, Susan Lucas, Hope Tice, Jan-Fang Cheng, Cliff Han, John C. Detter, David Bruce, Lynne Goodwin, Patrick Chain…

    Citation: Standards in Genomic Sciences 2009 1:1030292

    Content type: OriginalPaper

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  43. Rhodothermus marinus Alfredsson et al. 1995 is the type species of the genus and is of phylogenetic interest because the Rhodothermaceae represent the deepest lineage in the phylum Bacteroidetes. R. marinus R-10T

    Authors: Matt Nolan, Brian J. Tindall, Helga Pomrenke, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, Cliff Han, David Bruce, Lynne Goodwin, Patrick Chain, Sam Pitluck…

    Citation: Standards in Genomic Sciences 2009 1:1030283

    Content type: OriginalPaper

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  44. This report summarizes the proceedings of the “Metagenomics, Metadata and Meta-analysis” (M3) Special Interest Group (SIG) meeting held at the Intelligent Systems for Molecular Biology 2009 conference. The Gen...

    Authors: Dawn Field, Iddo Friedberg, Peter Sterk, Renzo Kottmann, Frank Oliver Glöckner, Lynette Hirschman, George M. Garrity, Guy Cochrane, John Wooley and Jack Gilbert

    Citation: Standards in Genomic Sciences 2009 1:1030278

    Content type: Report

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  45. Halomicrobium mukohataei (Ihara et al. 1997) Oren et al. 2002 is the type species of the genus Halomicrobium. It is of phylogenetic interest because of its isolated location within the large euryarchaeal family H...

    Authors: Brian J. Tindall, Susanne Schneider, Alla Lapidus, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Elizabeth Saunders, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Mikhailova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2009 1:1030270

    Content type: OriginalPaper

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  46. Jonesia denitrificans (Prevot 1961) Rocourt et al. 1987 is the type species of the genus Jonesia, and is of phylogenetic interest because of its isolated location in the actinobacterial suborder Micrococcineae. J...

    Authors: Rüdiger Pukall, Gabriele Gehrich-Schröter, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Sam Pitluck, Jan-Fang Cheng, Alex Copeland, Elizabeth Saunders, Thomas Brettin, John C. Detter, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2009 1:1030262

    Content type: OriginalPaper

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  47. Thermanaerovibrio acidaminovorans (Guangsheng et al. 1997) Baena et al. 1999 is the type species of the genus Thermanaerovibrio and is of phylogenetic interest because of the very isolated location of the novel p...

    Authors: Mansi Chovatia, Johannes Sikorski, Maren Schröder, Alla Lapidus, Matt Nolan, Hope Tice, Tijana Glavina Del Rio, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, David Bruce, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2009 1:1030254

    Content type: OriginalPaper

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  48. Desulfotomaculum acetoxidans Widdel and Pfennig 1977 was one of the first sulfate-reducing bacteria known to grow with acetate as sole energy and carbon source. It is able to oxidize substrates completely to carb...

    Authors: Stefan Spring, Alla Lapidus, Maren Schröder, Dorothea Gleim, David Sims, Linda Meincke, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Susan Lucas, Feng Chen, Matt Nolan, David Bruce, Lynne Goodwin, Sam Pitluck…

    Citation: Standards in Genomic Sciences 2009 1:1030242

    Content type: OriginalPaper

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  49. Slackia heliotrinireducens (Lanigan 1983) Wade et al. 1999 is of phylogenetic interest because of its location in a genomically yet uncharted section of the family Coriobacteriaceae, within the deep branching Act...

    Authors: Rüdiger Pukall, Alla Lapidus, Matt Nolan, Alex Copeland, Tijana Glavina Del Rio, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Olga Chertkov, David Bruce, Lynne Goodwin, Cheryl Kuske, Thomas Brettin, John C. Detter, Cliff Han…

    Citation: Standards in Genomic Sciences 2009 1:1030234

    Content type: OriginalPaper

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  50. Kangiella koreensis (Yoon et al. 2004) is the type species of the genus and is of phylogenetic interest because of the very isolated location of the genus Kangiella in the gammaproteobacterial order Oceanospirill...

    Authors: Cliff Han, Johannes Sikorski, Alla Lapidus, Matt Nolan, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Susan Lucas, Feng Chen, Alex Copeland, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinnikova, Amrita Pati, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2009 1:1030226

    Content type: OriginalPaper

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