Skip to main content

Articles

Page 15 of 18

  1. Thermomonospora curvata Henssen 1957 is the type species of the genus Thermomonospora. This genus is of interest because members of this clade are sources of new antibiotics, enzymes, and products with pharmacolo...

    Authors: Olga Chertkov, Johannes Sikorski, Matt Nolan, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Galina Ovchinnikova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2015 4:4010013

    Content type: OriginalPaper

    Published on:

  2. Leadbetterella byssophila Weon et al. 2005 is the type species of the genus Leadbetterella of the family Cytophagaceae in the phylum Bacteroidetes. Members of the phylum Bacteroidetes are widely distributed in na...

    Authors: Birte Abt, Hazuki Teshima, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia, Cliff Han…

    Citation: Standards in Genomic Sciences 2015 4:4010002

    Content type: OriginalPaper

    Published on:

  3. In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel o...

    Authors: Hernan A. Lorenzi, Jeff Hoover, Jason Inman, Todd Safford, Sean Murphy, Leonid Kagan and Shannon J. Williamson

    Citation: Standards in Genomic Sciences 2011 4:4030418

    Content type: OriginalPaper

    Published on:

  4. Desulfobacca acetoxidans Elferink et al. 1999 is the type species of the genus Desulfobacca, which belongs to the family Syntrophaceae in the class Deltaproteobacteria. The species was first observed in a study o...

    Authors: Markus Göker, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani…

    Citation: Standards in Genomic Sciences 2011 4:4030393

    Content type: OriginalPaper

    Published on:

  5. Treponema succinifaciens Cwyk and Canale-Parola 1981 is of interest because this strictly anaerobic, apathogenic member of the genus Treponema oxidizes carbohydrates and couples the Embden-Meyerhof pathway via ac...

    Authors: Cliff Han, Sabine Gronow, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Ahmed Zeytun, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4030361

    Content type: OriginalPaper

    Published on:

  6. Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest b...

    Authors: A. Christine Munk, Alla Lapidus, Susan Lucas, Matt Nolan, Hope Tice, Jan-Fang Cheng, Tijana Glavina Del Rio, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen…

    Citation: Standards in Genomic Sciences 2011 4:4030342

    Content type: OriginalPaper

    Published on:

  7. Mahella australiensis Bonilla Salinas et al. 2004 is the type species of the genus Mahella, which belongs to the family Thermoanaerobacteraceae. The species is of interest because it differs from other known anae...

    Authors: Johannes Sikorski, Hazuki Teshima, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Roxanne Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4030331

    Content type: OriginalPaper

    Published on:

  8. Nitratifractor salsuginis Nakagawa et al. 2005 is the type species of the genus Nitratifractor, a member of the family Nautiliaceae. The species is of interest because of its high capacity for nitrate reduction v...

    Authors: Iain Anderson, Johannes Sikorski, Ahmet Zeytun, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4030322

    Content type: OriginalPaper

    Published on:

  9. Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce ...

    Authors: Natalia Ivanova, Johannes Sikorski, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4030312

    Content type: OriginalPaper

    Published on:

  10. Hippea maritima (Miroshnichenko et al. 1999) is the type species of the genus Hippea which belongs to the family Desulfurellaceae within the class Deltaproteobacteria. The anaerobic, moderately thermophilic marin...

    Authors: Marcel Huntemann, Megan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Galina Ovchinikova…

    Citation: Standards in Genomic Sciences 2011 4:4030303

    Content type: OriginalPaper

    Published on:

  11. Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 is the type species of the genus Rhodospirillum, which is the type genus of the family Rhodospirillaceae in the class Alphaproteobacteria. The species is of speci...

    Authors: A. Christine Munk, Alex Copeland, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Kerrie Barry, John C. Detter, Nancy Hammon, Sanjay Israni, Sam Pitluck, Thomas Brettin, David Bruce, Cliff Han, Roxanne Tapia, Paul Gilna, Jeremy Schmutz…

    Citation: Standards in Genomic Sciences 2011 4:4030293

    Content type: OriginalPaper

    Published on:

  12. In the future, we hope to see an open and thriving data market in which users can find and select data from a wide range of data providers. In such an open access market, data are products that must be packaged a...

    Authors: Norman Morrison, David Hancock, Lynette Hirschman, Peter Dawyndt, Bert Verslyppe, Nikos Kyrpides, Renzo Kottmann, Pelin Yilmaz, Frank Oliver Glöckner, Jeff Grethe, Tim Booth, Peter Sterk, Goran Nenadic and Dawn Field

    Citation: Standards in Genomic Sciences 2011 4:4020286

    Content type: OriginalPaper

    Published on:

  13. In any sequencing project, the possible depth of comparative analysis is determined largely by the amount and quality of the accompanying contextual data. The structure, content, and storage of this contextual...

    Authors: Melissa Beth Duhaime, Renzo Kottmann, Dawn Field and Frank Oliver Glöckner

    Citation: Standards in Genomic Sciences 2011 4:4020271

    Content type: OriginalPaper

    Published on:

  14. Here we develop an argument in support of sequencing a garter snake (Thamnophis sirtalis) genome, and outline a plan to accomplish this. This snake is a common, widespread, nonvenomous North American species that...

    Authors: Todd A. Castoe, Anne M. Bronikowski, Edmund D. Brodie III, Scott V. Edwards, Michael E. Pfrender, Michael D. Shapiro, David D. Pollock and Wesley C. Warren

    Citation: Standards in Genomic Sciences 2011 4:4020257

    Content type: OriginalPaper

    Published on:

  15. This report summarizes the proceedings of the structure mapping working group meeting of the RNA Ontology Consortium (ROC), held in Kona, Hawaii on January 8–9, 2011. The ROC hosted this workshop to facilitate...

    Authors: Amanda Birmingham, Jose C. Clemente, Narayan Desai, Jack Gilbert, Antonio Gonzalez, Nikos Kyrpides, Folker Meyer, Eric Nawrocki, Peter Sterk, Jesse Stombaugh, Zasha Weinberg, Doug Wendel, Neocles B. Leontis, Craig Zirbel, Rob Knight and Alain Laederach

    Citation: Standards in Genomic Sciences 2011 4:4020252

    Content type: Report

    Published on:

  16. The Institute for Genome Sciences (IGS) has developed a prokaryotic annotation pipeline that is used for coding gene/RNA prediction and functional annotation of Bacteria and Archaea. The fully automated pipeline ...

    Authors: Kevin Galens, Joshua Orvis, Sean Daugherty, Heather H. Creasy, Sam Angiuoli, Owen White, Jennifer Wortman, Anup Mahurkar and Michelle Gwinn Giglio

    Citation: Standards in Genomic Sciences 2011 4:4020244

    Content type: OriginalPaper

    Published on:

  17. Bacteroides coprosuis Whitehead et al. 2005 belongs to the genus Bacteroides, which is a member of the family Bacteroidaceae. Members of the genus Bacteroides in general are known as beneficial protectors of anim...

    Authors: Miriam Land, Brittany Held, Sabine Gronow, Birte Abt, Susan Lucas, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2011 4:4020233

    Content type: OriginalPaper

    Published on:

  18. Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 is the type species of the genus Cellulophaga which belongs to the family Flavobacteriaceae within the phylum ‘Bacteroidetes’ and was isolated from marine bea...

    Authors: Amrita Pati, Birte Abt, Hazuki Teshima, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4020221

    Content type: OriginalPaper

    Published on:

  19. Oceanithermus profundus Miroshnichenko et al. 2003 is the type species of the genus Oceanithermus, which belongs to the family Thermaceae. The genus currently comprises two species whose members are thermophilic ...

    Authors: Amrita Pati, Xiaojing Zhang, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4020210

    Content type: OriginalPaper

    Published on:

  20. Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 is the type species of the genus Odoribacter, which belongs to the family Porphyromonadaceae in the order ‘Bacteroidales’. The species is of inter...

    Authors: Markus Göker, Sabine Gronow, Ahmet Zeytun, Matt Nolan, Susan Lucas, Alla Lapidus, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2011 4:4020200

    Content type: OriginalPaper

    Published on:

  21. Bacteroides salanitronis Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. The species is of interest because it was isolated from the gut of a chicken and the gro...

    Authors: Sabine Gronow, Brittany Held, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Shweta Deshpande, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4020191

    Content type: OriginalPaper

    Published on:

  22. Vibrio tubiashii NCIMB 1337 is a major and increasingly prevalent pathogen of bivalve mollusks, and shares a close phylogenetic relationship with both V. orientalis and V. coralliilyticus. It is a Gram-negative, ...

    Authors: Ben Temperton, Simon Thomas, Karen Tait, Helen Parry, Matt Emery, Mike Allen, John Quinn, John MacGrath and Jack Gilbert

    Citation: Standards in Genomic Sciences 2011 4:4020183

    Content type: OriginalPaper

    Published on:

  23. Desulfurococcus mucosus Zillig and Stetter 1983 is the type species of the genus Desulfurococcus, which belongs to the crenarchaeal family Desulfurococcaceae. The species is of interest because of its position in...

    Authors: Reinhard Wirth, Olga Chertkov, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Pagani Ioanna, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4020173

    Content type: OriginalPaper

    Published on:

  24. Deinococcus maricopensis (Rainey and da Costa 2005) is a member of the genus Deinococcus, which is comprised of 44 validly named species and is located within the deeply branching bacterial phylum DeinococcusThe...

    Authors: Rüdiger Pukall, Ahmet Zeytun, Susan Lucas, Alla Lapidus, Nancy Hammon, Shweta Deshpande, Matt Nolan, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Mikhailova, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4020163

    Content type: OriginalPaper

    Published on:

  25. Marivirga tractuosa (Lewin 1969) Nedashkovskaya et al. 2010 is the type species of the genus Marivirga, which belongs to the family Flammeovirgaceae. Members of this genus are of interest because of their gliding...

    Authors: Ioanna Pagani, Olga Chertkov, Alla Lapidus, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Alex Copeland, Jan-Fang Cheng, Matt Nolan, Elizabeth Saunders, Sam Pitluck, Brittany Held, Lynne Goodwin, Konstantinos Liolios, Galina Ovchinikova, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4020154

    Content type: OriginalPaper

    Published on:

  26. Riemerella anatipestifer (Hendrickson and Hilbert 1932) Segers et al. 1993 is the type species of the genus Riemerella, which belongs to the family Flavobacteriaceae. The species is of interest because of the pos...

    Authors: Konstantinos Mavromatis, Megan Lu, Monica Misra, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4020144

    Content type: OriginalPaper

    Published on:

  27. Hydrogenobacter thermophilus Kawasumi et al. 1984 is the type species of the genus Hydrogenobacter. H. thermophilus was the first obligate autotrophic organism reported among aerobic hydrogen-oxidizing bacteria. ...

    Authors: Ahmet Zeytun, Johannes Sikorski, Matt Nolan, Alla Lapidus, Susan Lucas, James Han, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Galina Ovchinnikova…

    Citation: Standards in Genomic Sciences 2011 4:4020131

    Content type: OriginalPaper

    Published on:

  28. Arthrobacter phenanthrenivorans is the type species of the genus, and is able to metabolize phenanthrene as a sole source of carbon and energy. A. phenanthrenivorans is an aerobic, non-motile, and Gram-positive b...

    Authors: Aristeidis Kallimanis, Kurt M. LaButti, Alla Lapidus, Alicia Clum, Athanasios Lykidis, Kostantinos Mavromatis, Ioanna Pagani, Konstantinos Liolios, Natalia Ivanova, Lynne Goodwin, Sam Pitluck, Amy Chen, Krishna Palaniappan, Victor Markowitz, Jim Bristow, Athanasios D. Velentzas…

    Citation: Standards in Genomic Sciences 2011 4:4020123

    Content type: OriginalPaper

    Published on:

  29. Campylobacter is one of the leading causes of food-borne gastroenteritis and has a high prevalence in poultry. Campylobacter jejuni subsp. jejuni 327 is a subspecies of the genus Campylobacter of the family Campy...

    Authors: Monica Takamiya, Asli Ozen, Morten Rasmussen, Thomas Alter, Tom Gilbert, Dave W. Ussery and Susanne Knøchel

    Citation: Standards in Genomic Sciences 2011 4:4020113

    Content type: OriginalPaper

    Published on:

  30. Desulfobulbus propionicus Widdel 1981 is the type species of the genus Desulfobulbus, which belongs to the family Desulfobulbaceae. The species is of interest because of its great implication in the sulfur cycle ...

    Authors: Ioanna Pagani, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Olga Chertkov, Karen Davenport, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4010100

    Content type: OriginalPaper

    Published on:

  31. Truepera radiovictrix Albuquerque et al. 2005 is the type species of the genus Truepera within the phylum “Deinococcus/Thermus”. T. radiovictrix is of special interest not only because of its isolated phylogeneti...

    Authors: Natalia Ivanova, Christine Rohde, Christine Munk, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Konstantinos Mavromatis, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2011 4:4010091

    Content type: OriginalPaper

    Published on:

  32. Weeksella virosa Holmes et al. 1987 is the sole member and type species of the genus Weeksella which belongs to the family Flavobacteriaceae of the phylum Bacteroidetes. Twenty-nine isolates, collected from clini...

    Authors: Elke Lang, Hazuki Teshima, Susan Lucas, Alla Lapidus, Nancy Hammon, Shweta Deshpande, Matt Nolan, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Mikhailova, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4010081

    Content type: OriginalPaper

    Published on:

  33. Cellulophaga algicola Bowman 2000 belongs to the family Flavobacteriaceae within the phylum ‘Bacteroidetes’ and was isolated from Melosira collected from the Eastern Antarctic coastal zone. The species is of inte...

    Authors: Birte Abt, Megan Lu, Monica Misra, Cliff Han, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4010072

    Content type: OriginalPaper

    Published on:

  34. Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 is the type species of the genus Isosphaera. The species is of interest because it was the first heterotrophic bacterium known to be phototactic, and...

    Authors: Markus Göker, David Cleland, Elizabeth Saunders, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4010063

    Content type: OriginalPaper

    Published on:

  35. Calditerrivibrio nitroreducens Iino et al. 2008 is the type species of the genus Calditerrivibrio. The species is of interest because of its important role in the nitrate cycle as nitrate reducer and for its isol...

    Authors: Sam Pitluck, Johannes Sikorski, Ahmet Zeytun, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4010054

    Content type: OriginalPaper

    Published on:

  36. Bacteroides helcogenes Benno et al. 1983 is of interest because of its isolated phylogenetic location and, although it has been found in pig feces and is known to be pathogenic for pigs, occurrence of this bacter...

    Authors: Amrita Pati, Sabine Gronow, Ahmet Zeytun, Alla Lapidus, Matt Nolan, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4010045

    Content type: OriginalPaper

    Published on:

  37. Paludibacter propionicigenes Ueki et al. 2006 is the type species of the genus Paludibacter, which belongs to the family Porphyromonadaceae. The species is of interest because of the position it occupies in the t...

    Authors: Sabine Gronow, Christine Munk, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2011 4:4010036

    Content type: OriginalPaper

    Published on:

  38. Thioalkalivibrio sulfidophilus” HL-EbGr7 is an obligately chemolithoautotrophic, haloalkaliphilic sulfur-oxidizing bacterium (SOB) belonging to the Gammaproteobacteria. The strain was found to predominate a full...

    Authors: Gerard Muyzer, Dimitry Yu Sorokin, Konstantinos Mavromatis, Alla Lapidus, Alicia Clum, Natalia Ivanova, Amrita Pati, Patrick d’Haeseleer, Tanja Woyke and Nikos C. Kyrpides

    Citation: Standards in Genomic Sciences 2011 4:4010023

    Content type: OriginalPaper

    Published on:

  39. Ilyobacter polytropus Stieb and Schink 1984 is the type species of the genus Ilyobacter, which belongs to the fusobacterial family Fusobacteriaceae. The species is of interest because its members are able to ferm...

    Authors: Johannes Sikorski, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxane Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2010 3:3030304

    Content type: OriginalPaper

    Published on:

  40. Aminomonas paucivorans Baena et al. 1999 is the type species of the genus Aminomonas, which belongs to the family Synergistaceae. The species is of interest because it is an asaccharolytic chemoorganotrophic bact...

    Authors: Sam Pitluck, Montri Yasawong, Brittany Held, Alla Lapidus, Matt Nolan, Alex Copeland, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Olga Chertkov, Lynne Goodwin, Roxane Tapia, Cliff Han, Konstantinos Liolios, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2010 3:3030285

    Content type: OriginalPaper

    Published on:

  41. Syntrophothermus lipocalidus Sekiguchi et al. 2000 is the type species of the genus Syntrophothermus. The species is of interest because of its strictly anaerobic lifestyle, its participation in the primary step ...

    Authors: Olivier Duplex Ngatchou Djao, Xiaojing Zhang, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Jan-Fang Cheng, Cliff Han, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2010 3:3030267

    Content type: OriginalPaper

    Published on:

  42. This report summarizes the proceedings of the second workshop of the ‘Minimum Information for Biological and Biomedical Investigations’ (MIBBI) consortium held on Dec 1–2, 2010 in Rüdesheim, Germany through th...

    Authors: Carsten Kettner, Dawn Field, Susanna-Assunta Sansone, Chris Taylor, Jan Aerts, Nigel Binns, Andrew Blake, Cedrik M. Britten, Ario de Marco, Jennifer Fostel, Pascale Gaudet, Alejandra González-Beltrán, Nigel Hardy, Jan Hellemans, Henning Hermjakob, Nick Juty…

    Citation: Standards in Genomic Sciences 2010 3:3030259

    Content type: Report

    Published on:

  43. This report details the outcome the first meeting of the Earth Microbiome Project to discuss sample selection and acquisition. The meeting, held at the Argonne National Laboratory on Wednesday October 6th 2010, f...

    Authors: Jack A. Gilbert, Folker Meyer, Janet Jansson, Jeff Gordon, Norman Pace, James Tiedje, Ruth Ley, Noah Fierer, Dawn Field, Nikos Kyrpides, Frank-Oliver Glöckner, Hans-Peter Klenk, K. Eric Wommack, Elizabeth Glass, Kathryn Docherty, Rachel Gallery…

    Citation: Standards in Genomic Sciences 2010 3:3030249

    Content type: Report

    Published on:

  44. Between July 18th and 24th 2010, 26 leading microbial ecology, computation, bioinformatics and statistics researchers came together in Snowbird, Utah (USA) to discuss the challenge of how to best characterize the...

    Authors: Jack A. Gilbert, Folker Meyer, Dion Antonopoulos, Pavan Balaji, C. Titus Brown, Christopher T. Brown, Narayan Desai, Jonathan A. Eisen, Dirk Evers, Dawn Field, Wu Feng, Daniel Huson, Janet Jansson, Rob Knight, James Knight, Eugene Kolker…

    Citation: Standards in Genomic Sciences 2010 3:3030243

    Content type: Report

    Published on:

  45. It is widely recognized that, with the advent of very high throughput, short read, and highly parallelized sequencing technologies, the generation of new DNA sequences from microbes, plants, metagenomes is out...

    Authors: Owen White and Nikos Kyrpides

    Citation: Standards in Genomic Sciences 2010 3:3030240

    Content type: Report

    Published on:

  46. This report summarizes the proceedings of the 10th workshop of the Genomic Standards Consortium (GSC), held at Argonne National Laboratory, IL, USA. It was the second GSC workshop to have open registration and...

    Authors: Elizabeth Glass, Folker Meyer, Jack A. Gilbert, Dawn Field, Sarah Hunter, Renzo Kottmann, Nikos Kyrpides, Susanna Sansone, Lynn Schriml, Peter Sterk, Owen White and John Wooley

    Citation: Standards in Genomic Sciences 2010 3:3030225

    Content type: Report

    Published on:

\