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Table 4. Number of genes associated with the general COG functional categories

From: Complete genome sequence of Archaeoglobus profundus type strain (AV18T)

Code

value

%age

Description

J

150

8.1

Translation, ribosomal structure and biogenesis

A

2

0.1

RNA processing and modification

K

67

3.6

Transcription

L

79

4.3

Replication, recombination and repair

B

4

0.2

Chromatin structure and dynamics

D

13

0.7

Cell cycle control, cell division, chromosome partitioning

Y

0

0.0

Nuclear structure

V

4

0.2

Defense mechanisms

T

46

2.5

Signal transduction mechanisms

M

40

2.2

Cell wall/membrane biogenesis

N

18

1.0

Cell motility

Z

0

0.0

Cytoskeleton

W

0

0.0

Extracellular structures

U

21

1.1

Intracellular trafficking and secretion

O

53

2.9

Posttranslational modification, protein turnover, chaperones

C

109

5.9

Energy production and conversion

G

41

2.2

Carbohydrate transport and metabolism

E

110

5.9

Amino acid transport and metabolism

F

47

2.5

Nucleotide transport and metabolism

H

85

4.6

Coenzyme transport and metabolism

I

24

1.3

Lipid transport and metabolism

P

57

3.1

Inorganic ion transport and metabolism

Q

7

0.4

Secondary metabolites biosynthesis, transport and catabolism

R

201

10.8

General function prediction only

S

169

9.1

Function unknown

-

642

34.6

Not in COGs