Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)
Code | value | %age | Description |
|---|---|---|---|
J | 152 | 10.8 | Translation, ribosomal structure and biogenesis |
A | 2 | 0.1 | RNA processing and modification |
K | 50 | 3.5 | Transcription |
L | 58 | 4.1 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 0 | 0.0 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.0 | Nuclear structure |
V | 12 | 0.9 | Defense mechanisms |
T | 17 | 1.2 | Signal transduction mechanisms |
M | 35 | 2.5 | Cell wall/membrane biogenesis |
N | 9 | 0.6 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 13 | 0.9 | Intracellular trafficking, secretion, and vesicular transport |
O | 44 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 96 | 6.8 | Energy production and conversion |
G | 55 | 3.9 | Carbohydrate transport and metabolism |
E | 71 | 5.0 | Amino acid transport and metabolism |
F | 32 | 2.3 | Nucleotide transport and metabolism |
H | 49 | 3.5 | Coenzyme transport and metabolism |
I | 14 | 1.0 | Lipid transport and metabolism |
P | 70 | 5.0 | Inorganic ion transport and metabolism |
Q | 4 | 0.3 | Secondary metabolites biosynthesis, transport and catabolism |
R | 176 | 12.5 | General function prediction only |
S | 467 | 33.1 | function unknown |
- | 467 | 33.1 | Not in COGs |