Table 4. Metagenomics annotation hierarchy.
From: The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data
Annotation Rank | Evidence Type | Evidence Class |
|---|---|---|
1 | HMM | TIGRfam Equivalog |
2 | HMM | Pfam Equivalog |
3 | HMM | TIGRfam Hypothetical Equivalog |
4 | HMM | Pfam Hypothetical Equivalog |
5 | HMM | TIGRfam Domain |
6 | PRIAM | PRIAM |
7 | HMM | TIGRfam Subfamily |
8 | HMM | TIGRfam Superfamily |
9 | HMM | TIGRfam EquivalogDomain |
10 | HMM | TIGRfam Hypothetical Equivalog Domain |
11 | HMM | TIGRfam Subfamily Domain |
12 | HMM | Pfam Subfamily |
13 | HMM | Pfam Superfamily |
14 | HMM | Pfam Equivalog Domain |
15 | HMM | Pfam Hypothetical Equivalog Domain |
16 | HMM | Pfam Subfamily Domain |
17 | BLAST | Panda BLASTP High Confidence |
18 | HMM | TIGRfam Domain |
19 | HMM | Pfam Domain |
20 | HMM | Pfam Uncharacterized |
21 | BLAST | Panda BLASTP Putative |
22 | BLAST | Panda BLASTP Conserved Domain |
23 | TMHMM | TMHMM |
24 | LIPOPROTEIN | Lipoprotein Motif |
25 | DEFAULT | Hypothetical |