Skip to main content

Table 1. Phages, from a marine habitat, as reported in literature and their corresponding INSDC accession numbers.

From: Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard

NCBI Organism name

INSDC identifier

Interpolated data? 1

Missing Elements?

Cyanophage PSS2

GQ334450

Yes

Complete

Flavobacterium phage 11b2

AJ842011

No - insufficient data

x, y, z, t

Halomonas phage phiHAP-1

EU399241

Yes

Complete

Listonella phage phiHSIC

AY772740

Yes

x, y

Phage phiJL001

AY576273

Yes

x, y

Pseudoalteromonas phage PM2

AF155037

No - insufficient data

x, y, z, t

Prochlorococcus phage P-SSP7

AY939843

Yes

Complete

Prochlorococcus phage P-SSM2

AY939844

Yes

Complete

Prochlorococcus phage P-SSM4

AY940168

Yes

Complete

Roseobacter phage SIO1

AF189021

No - insufficient data

x, y, z

Roseobacter phage SIO1-2001

FJ867910

No - insufficient data

x, y, z, t

Roseobacter phage SBRSIO67-2001

FJ867912

No - insufficient data

x, y, z, t

Roseobacter phage OS-2001

FJ867913

No - insufficient data

x, y, z, t

Roseobacter phage MB-2001

FJ867914

No - insufficient data

x, y, z, t

Silicibacter phage DSS3phi2

FJ591093

No - insufficient data

x, y

Sulfitobacter phage EE36phi1

FJ591094

No - insufficient data

x, y

Synechococcus phage P60

AF338467

No - insufficient data

x, y, z

Synechococcus phage S-PM2

AJ630128

No - insufficient data

t

Synechococcus phage S-RSM4

FM207411

No - insufficient data

x, y, z, t

Synechococcus phage syn9

DQ149023

No - too close to coast

x, y, t

Synechococcus phage Syn5

EF372997

Yes

t

Vibrio phage VP2

AY505112

No - insufficient data

x, y, z, t

Vibrio phage VP4

DQ029335

No - insufficient data

x, y, z, t

Vibrio phage VP5

AY510084

No - insufficient data

x, y, z, t

Vibrio phage VP16T

AY328852

No - too close to coast

x, y, t

Vibrio phage VP16C

AY328853

No - too close to coast

x, y, t

Vibrio phage VpV262

AY095314

No - insufficient data

x, y, z, t

Vibrio phage VHML3

AY133112

No - insufficient data

x, y, z, t

Vibrio phage KVP40

AY283928

No - insufficient data

x, y, z, t

Vibrio phage K1394

AF125163

No - insufficient data

x, y, z, t

  1. Phages finally determined not to be from marine habitats are noted in superscript and alternatively described according to EnvO-Lite (v1.4). Genomes for which interpolated data could be determined and missing elements required for geo-referencing are listed (note: x, y, z and tare required for precise metadata interpolation).
  2. 1) This can be as minimal as a “fuzzy” habitat descriptor (rather than precise x, y), requires a depth (or ‘surface sample’ description), and does not require a date (as yearly averages can be taken). However, if the sample site is too close to the shore, data interpolation is not possible.
  3. 2) isolated from sea ice (aquatic habitat)
  4. 3) isolated from aquacultured shrimp (organism-associated habitat)
  5. 4) isolated from human (organism-associated habitat)