Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)
Code | value | %age | Description |
|---|---|---|---|
J | 162 | 4.6 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 162 | 4.6 | Transcription |
L | 121 | 3.4 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 26 | 0.7 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 61 | 1.7 | Defense mechanisms |
T | 109 | 3.1 | Signal transduction mechanisms |
M | 173 | 4.9 | Cell wall/membrane biogenesis |
N | 36 | 1.0 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 47 | 1.3 | Intracellular trafficking and secretion |
O | 108 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 226 | 6.4 | Energy production and conversion |
G | 157 | 4.5 | Carbohydrate transport and metabolism |
E | 404 | 11.5 | Amino acid transport and metabolism |
F | 60 | 1.7 | Nucleotide transport and metabolism |
H | 145 | 4.1 | Coenzyme transport and metabolism |
I | 111 | 3.1 | Lipid transport and metabolism |
P | 163 | 4.6 | Inorganic ion transport and metabolism |
Q | 79 | 2.2 | Secondary metabolites biosynthesis, transport and catabolism |
R | 373 | 10.6 | General function prediction only |
S | 207 | 5.9 | Function unknown |
- | 963 | 27.3 | Not in COGs |