Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)
Code | value | %age | Description |
|---|---|---|---|
J | 151 | 5.9 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.0 | RNA processing and modification |
K | 94 | 3.7 | Transcription |
L | 129 | 5.1 | Replication, recombination and repair |
B | 2 | 0.1 | Chromatin structure and dynamics |
D | 28 | 1.1 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 21 | 0.8 | Defense mechanisms |
T | 168 | 6.6 | Signal transduction mechanisms |
M | 146 | 5.7 | Cell wall/membrane biogenesis |
N | 74 | 2.9 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 82 | 3.2 | Intracellular trafficking and secretion |
O | 100 | 3.9 | Posttranslational modification, protein turnover, chaperones |
C | 191 | 7.5 | Energy production and conversion |
G | 101 | 4.0 | Carbohydrate transport and metabolism |
E | 188 | 7.4 | Amino acid transport and metabolism |
F | 53 | 2.1 | Nucleotide transport and metabolism |
H | 109 | 4.3 | Coenzyme transport and metabolism |
I | 43 | 1.7 | Lipid transport and metabolism |
P | 95 | 3.7 | Inorganic ion transport and metabolism |
Q | 20 | 0.8 | Secondary metabolites biosynthesis, transport and catabolism |
R | 212 | 8.3 | General function prediction only |
S | 152 | 6.0 | Function unknown |
- | 633 | 24.8 | Not in COGs |