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Table 4. Number of genes associated with the 25 general COG functional categories

From: Complete genome sequence of Kosakonia sacchari type strain SP1T

Code

Value

% of totala

Description

J

193

4.33

Translation

A

2

0.04

RNA processing and modification

K

386

8.65

Transcription

L

170

3.81

Replication, recombination and repair

B

0

0.00

Chromatin structure and dynamics

D

38

0.85

Cell cycle control, mitosis and meiosis

Y

0

0.00

Nuclear structure

V

52

1.17

Defense mechanisms

T

269

6.03

Signal transduction mechanisms

M

251

5.63

Cell wall/membrane biogenesis

N

128

2.87

Cell motility

Z

0

0.00

Cytoskeleton

W

0

0.00

Extracellular structures

U

107

2.40

Intracellular trafficking and secretion

O

144

3.23

Posttranslational modification, protein turnover, chaperones

C

268

6.01

Energy production and conversion

G

394

8.83

Carbohydrate transport and metabolism

E

414

9.28

Amino acid transport and metabolism

F

90

2.02

Nucleotide transport and metabolism

H

186

4.17

Coenzyme transport and metabolism

I

117

2.62

Lipid transport and metabolism

P

265

5.94

Inorganic ion transport and metabolism

Q

82

1.84

Secondary metabolites biosynthesis, transport and catabolism

R

481

10.78

General function prediction only

S

382

8.57

Function unknown

-

674

15.11

Not in COGs

  1. a) The total is based on the total number of protein coding genes in the annotated genome.