Skip to main content
Figure 2. | Standards in Genomic Sciences

Figure 2.

From: Draft genome sequence of Dyadobacter tibetensis type strain (Y620-1) isolated from glacial ice

Figure 2.

Phylogenetic tree highlighting the position of Dyadobacter tibetensis (T) Y620-1 relative to other type strains within the genus Dyadobacter. Type strains D. alkalitolerans DSM 23607, D. beijingensis DSM 21582 and D. fermentans DSM 18053 are having fully sequenced genomes with assigned GenBank Assembly ID GCA_000428845.1, GCF_000382205.1 and GCA_000023125.1. The type strains and their corresponding GenBank accession numbers for 16S rRNA genes are: D. ginsengisoli Gsoil 043(T), AB245369 ; D. crusticola, DSM 16708, AJ821885 ; D. alkalitolerans DSM 23607, EU360597; D. psychrophilus DSM 22270, GQ131577; D. koreensis KCTC 12534(T), EF017660; D. soli MJ20(T), GQ241324; D. fermentans DSM 18053, CP001619; D. hamtensisHHS 11(T), AJ619978; D. beijingensis DSM 21582, DQ335125; Persicitalea jodogahamensis (T) Shu-9-SY12-35C, AB272165. The tree uses sequences aligned by the RDP aligner, and uses the Jukes-Cantor corrected distance model to construct a distance matrix based on alignment model positions without the use of alignment inserts, and uses a minimum comparable position of 200. The tree was built with RDP Tree Builder, which uses Weighbor [21] with an alphabet size of 4 and length size of 1000. Building of the tree also involves a bootstrapping process repeated 100 times to generate a majority consensus tree [22]. Siphonobacter aquaeclarae DSM 21668, FJ177421, was used as an out group.

Back to article page