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Figure 3: | Standards in Genomic Sciences

Figure 3:

From: Quantifying Protein Function Specificity in the Gene Ontology

Figure 3:

Calculation of IC, implemented in the R programming language. The “root_term” is “GO:0003674” for the root term in the GO molecular function hierarchy. The “gene2go” argument is the gene2go file available at ftp://ftp.ncbi.nlm.nih.gov/gene/DATA, or an equivalent file with associations between genes/proteins (a “GeneID” column header) and GO terms (“GOTerm” column header).

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