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Table 5. Number of genes associated with the 25 general COG functional categories

From: Genome sequence and description of Bacteroides timonensis sp. nov.

Code Value %agea Description
J 156 2.66 Translation
A 0 0 RNA processing and modification
K 234 4.00 Transcription
L 200 3.42 Replication, recombination and repair
B 0 0 Chromatin structure and dynamics
D 27 0.46 Cell cycle control, mitosis and meiosis
Y 0 0 Nuclear structure
V 107 1.83 Defense mechanisms
T 240 4.22 Signal transduction mechanisms
M 361 6.17 Cell wall/membrane biogenesis
N 5 0.08 Cell motility
Z 0 0 Cytoskeleton
W 0 0 Extracellular structures
U 65 1.11 Intracellular trafficking and secretion
O 89 1.52 Posttranslational modification, protein turnover, chaperones
C 168 2.87 Energy production and conversion
G 369 6.31 Carbohydrate transport and metabolism
E 212 3.62 Amino acid transport and metabolism
F 73 1.25 Nucleotide transport and metabolism
H 130 2.22 Coenzyme transport and metabolism
I 87 1.48 Lipid transport and metabolism
P 202 3.42 Inorganic ion transport and metabolism
Q 47 0.80 Secondary metabolites biosynthesis, transport and catabolism
R 518 8.86 General function prediction only
S 197 3.37 Function unknown
- 2966 51.26 Not in COGs
  1. aThe total is based on the total number of protein-coding genes in the annotated genome