Figure 1.
From: The complete genome sequence of Clostridium indolis DSM 755T
Phylogenetic tree based on 16S rRNA gene sequences highlighting the position of Clostridium indolis relative to other type strains (T) within the Lachnospiraceae. The strains and their corresponding NCBI accession numbers (and, when applicable, draft sequence coordinates) for 16S rRNA genes are: Desulfotomaculum guttoideum strain DSM 4024T, Y11568; C. sphenoides ATCC 19403T, AB075772; C. celerecrescens DSM 5628T, X71848; C. indolis DSM 755T, Pending release by JGI: 1620643–1622056; C. methoxybenzovorans SR3, AF067965; C. saccharolyticum WM1T, NC_014376:18567-20085; C. algidixylanolyticum SPL73T, AF092549; C. hathewayi DSM 13479T, ADLN00000000: 202–1639; Eubacterium eligens L34420 T, L34420; Ruminococcus gnavus ATCC 29149T, X94967; R. torques ATCC 27756T, L76604; E. rectale L34627T; Roseburia intestinalis L1-82T, AJ312385; R. hominis A2-183T, AJ270482; C. jejuense HY-35-12T, AY494606; C. xylanovorans HESP1T, AF116920; C. phytofermentans ISDgT, CP000885: 15754–17276. The tree uses sequences aligned by MUSCLE, and was inferred using the Neighbor-Joining method [2]. The optimal tree with the sum of branch lengths = 0.50791241 is shown. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (500 replicates) are shown next to the branches [3]. The tree is drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. The evolutionary distances were computed using the Maximum Composite Likelihood method [4] and are in the units of the number of base substitutions per site. Evolutionary analyses were conducted in MEGA 5 [5]. C. stercorarium ATCC 35414T, CP003992: 856992–858513 was used as an outgroup.