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Table 3. Nucleotide content and gene count levels of the assembled SBC oil seep metagenome

From: Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

Attribute Value % of Total
Total base pairs sequenced (Gb) 51.7 %100
Total number of sequences (scaffolds) 803,203 38.80%
DNA, total number of bases 495,862,225 0.99%
DNA G+C number of bases 222,883,192 44.95%*
Genes   
RNA genes 7,742 0.68%
rRNA genes 1,827 0.16%
5S rRNA 420 0.04%
16S rRNA 520 0.05%
18S rRNA 12 0.00%
23S rRNA 866 0.08%
28S rRNA 9 0.00%
tRNA genes 5,915 0.52%
Protein coding genes 1,135,810 99.32%
with Product Name 617,327 53.98%
with COG 620,853 54.29%
with Pfam 770,455 67.37%
with KO 461,840 40.39%
with Enzyme 265,509 23.22%
with MetaCyc 182,179 15.93%
with KEGG 266,160 23.27%
COG Clusters 4724 96.94%
Pfam Clusters 14,501 97.77%
  1. * GC percentage shown as count of G’s and C’s divided by a total number of G’s, C’s, A’s, and T’s. This is not necessarily synonymous with the total number of bases.