Table 3. Nucleotide content and gene count levels of the assembled SBC oil seep metagenome
Attribute | Value | % of Total |
|---|---|---|
Total base pairs sequenced (Gb) | 51.7 | %100 |
Total number of sequences (scaffolds) | 803,203 | 38.80% |
DNA, total number of bases | 495,862,225 | 0.99% |
DNA G+C number of bases | 222,883,192 | 44.95%* |
Genes | Â | Â |
RNA genes | 7,742 | 0.68% |
rRNA genes | 1,827 | 0.16% |
5S rRNA | 420 | 0.04% |
16S rRNA | 520 | 0.05% |
18S rRNA | 12 | 0.00% |
23S rRNA | 866 | 0.08% |
28S rRNA | 9 | 0.00% |
tRNA genes | 5,915 | 0.52% |
Protein coding genes | 1,135,810 | 99.32% |
with Product Name | 617,327 | 53.98% |
with COG | 620,853 | 54.29% |
with Pfam | 770,455 | 67.37% |
with KO | 461,840 | 40.39% |
with Enzyme | 265,509 | 23.22% |
with MetaCyc | 182,179 | 15.93% |
with KEGG | 266,160 | 23.27% |
COG Clusters | 4724 | 96.94% |
Pfam Clusters | 14,501 | 97.77% |