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Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Figure 1.

Phylogenetic relationships between HIMB11 and bacterial strains belonging to the Roseobacter clade. SSU rRNA gene sequences were aligned with version 111 of the ‘All-Species Living Tree’ project SSU rRNA gene database [16] using the ARB software package [17]. The phylogeny was constructed from nearly full-length gene sequences using the RAxML maximum likelihood method [18] within ARB, filtered to exclude alignment positions that contained gaps or ambiguous nucleotides in any of the sequences included in the tree. Bootstrap analyses were determined by RAxML [19] via the raxmlGUI graphical front end [20]. The scale bar corresponds to 0.05 substitutions per nucleotide position. Open circles indicate nodes with bootstrap support between 50–80%, while closed circles indicate bootstrap support >80%, from 500 replicates. A variety of Archaea were used as outgroups.

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Environmental Microbiome

ISSN: 2524-6372