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Table 3. Nucleotide content and gene count levels of the genome

From: Complete genome sequence of a plant associated bacterium Bacillus amyloliquefaciens subsp. plantarum UCMB5033

Attribute

Value

% of totala

Genome size (bp)

4,071,168

100

DNA cding region (bp)

3,565,936

87.5

DNA G+C content (bp)

1,880,879

46.1

Total number of genesb

4095

n/a

RNA genes

116

n/a

rRNA operons

10

n/a

Protein-coding genes

3912

100

CDSs with predicted functions

3170

81

Uncharacterized/Hypothetical genes

742

18.1

CDSs assigned to COGs

3506

89.6

CDSs with signal peptides

302

7.7

CDSs with transmembrane helices

1012

25.8

  1. a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.
  2. b) Also includes 36 pseudogenes and 66 non-coding RNA.