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Table 4. Number of genes associated with general COGs functional categories

From: Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8T

Code

Value

% agea

Description

J

156

6.38

Translation, ribosomal structure, and biogenesis

A

4

0.16

RNA processing and modification

K

218

8.91

Transcription

L

167

6.83

Replication, recombination, and repair

B

1

0.04

Chromatin structure and dynamics

D

21

0.86

Cell cycle control, cell division, and chromosome partitioning

Y

0

0.00

Nuclear structure

V

40

1.64

Defense mechanisms

T

100

4.09

Signal transduction mechanisms

M

112

4.58

Cell wall/membrane/envelope biogenesis

N

0

0.00

Cell motility

Z

1

0.04

Cytoskeleton

W

0

0.00

Extracellular structures

U

32

1.31

Intracellular trafficking, secretion, and vesicular transport

O

69

2.82

Posttranslational modification, protein turnover, and chaperones

C

131

5.36

Energy production and conversion

G

129

5.27

Carbohydrate transport and metabolism

E

315

12.88

Amino acid transport and metabolism

F

74

3.03

Nucleotide transport and metabolism

H

101

4.13

Coenzyme transport and metabolism

I

81

3.31

Lipid transport and metabolism

P

154

6.30

Inorganic ion transport and metabolism

Q

51

2.09

Secondary metabolites biosynthesis, transport, and catabolism

R

307

12.55

General function prediction only

S

182

7.42

Function unknown

-

723

24.65

Not in COGs

  1. aThe total is based on the total number of protein-coding genes in the annotated genome.