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Table 5. Number of genes associated with the 25 general COG functional categories

From: Non-contiguous finished genome sequence and description of Alistipes ihumii sp. nov.

Code

Value

%agea

Description

J

143

6.34

Translation

A

0

0

RNA processing and modification

K

88

3.90

Transcription

L

113

5.01

Replication, recombination and repair

B

0

0

Chromatin structure and dynamics

D

19

0.84

Cell cycle control, mitosis and meiosis

Y

0

0

Nuclear structure

V

28

1.24

Defense mechanisms

T

38

1.69

Signal transduction mechanisms

M

161

7.14

Cell wall/membrane biogenesis

N

6

0.27

Cell motility

Z

0

0

Cytoskeleton

W

0

0

Extracellular structures

U

32

142

Intracellular trafficking and secretion

O

60

2.66

Posttranslational modification, protein turnover, chaperones

C

111

4.92

Energy production and conversion

G

106

4.70

Carbohydrate transport and metabolism

E

131

5.81

Amino acid transport and metabolism

F

52

2.31

Nucleotide transport and metabolism

H

75

3.33

Coenzyme transport and metabolism

I

49

2.17

Lipid transport and metabolism

P

72

3.19

Inorganic ion transport and metabolism

Q

21

0.93

Secondary metabolites biosynthesis, transport and catabolism

R

235

10.43

General function prediction only

S

91

4.04

Function unknown

-

790

35.05

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome.