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Table 5. Number of genes associated with the 25 general COG functional categories

From: Non-contiguous finished genome sequence and description of Holdemania massiliensis sp. nov.

Code Value %agea Description
J 153 4.42 Translation
A 0 0 RNA processing and modification
K 365 10.55 Transcription
L 137 3.96 Replication, recombination and repair
B 0 0 Chromatin structure and dynamics
D 36 1.04 Cell cycle control, mitosis and meiosis
Y 0 0 Nuclear structure
V 110 3.18 Defense mechanisms
T 165 4.77 Signal transduction mechanisms
M 171 4.94 Cell wall/membrane biogenesis
N 11 0.32 Cell motility
Z 1 0.03 Cytoskeleton
W 0 0 Extracellular structures
U 27 0.78 Intracellular trafficking and secretion
O 56 1.62 Posttranslational modification, protein turnover, chaperones
C 149 4.31 Energy production and conversion
G 372 10.75 Carbohydrate transport and metabolism
E 178 5.14 Amino acid transport and metabolism
F 71 2.05 Nucleotide transport and metabolism
H 43 1.24 Coenzyme transport and metabolism
I 41 1.18 Lipid transport and metabolism
P 119 3.44 Inorganic ion transport and metabolism
Q 44 1.27 Secondary metabolites biosynthesis, transport and catabolism
R 403 11.64 General function prediction only
S 203 5.87 Function unknown
- 880 25.43 Not in COGs
  1. a The total is based on the total number of protein coding genes in the annotated genome.