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Table 4. Number of genes associated with the 25 general COG functional categories

From: Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987T

Code Value %age Description
J 141 6.75 Translation
A 0 0 RNA processing and modification
K 82 3.92 Transcription
L 103 4.93 Replication, recombination and repair
B 0 0 Chromatin structure and dynamics
D 20 0.96 Cell cycle control, mitosis and meiosis
Y 0 0 Nuclear structure
V 36 1.72 Defense mechanisms
T 50 2.39 Signal transduction mechanisms
M 143 6.84 Cell wall/membrane biogenesis
N 2 0.10 Cell motility
Z 1 0.05 Cytoskeleton
W 0 0 Extracellular structures
U 29 1.39 Intracellular trafficking and secretion
O 63 3.01 Posttranslational modification, protein turnover, chaperones
C 86 4.11 Energy production and conversion
G 119 5.69 Carbohydrate transport and metabolism
E 122 5.84 Amino acid transport and metabolism
F 52 2.49 Nucleotide transport and metabolism
H 81 3.88 Coenzyme transport and metabolism
I 47 2.25 Lipid transport and metabolism
P 89 4.26 Inorganic ion transport and metabolism
Q 20 0.96 Secondary metabolites biosynthesis, transport and catabolism
R 225 10.77 General function prediction only
S 78 3.73 Function unknown
X 657 31.44 Not in COGs
  1. The total is based on the total number of protein coding genes in the annotated genome.