Skip to main content

Table 1. Classification and general features of Phocaeicola abscessus strain 7401987T

From: Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987T

MIGS ID

Property

Term

Evidence codea

 

Current classification

Domain Bacteria

TAS [4]

 

Phylum Bacteroidetes

TAS [5,6]

 

Class Bacteroidia

TAS [5,7]

 

Order Bacteroidales

TAS [5,8]

 

Genus Phocaeicola

TAS [1]

 

Species Phocaeicola abscessus

TAS [1]

 

Strain 7401987T

TAS [1]

 

Gram stain

Negative

TAS [1]

 

Cell shape

Pleomorphic forms

TAS [1]

 

Motility

Motile

TAS [1]

 

Sporulation

Non-sporulating

TAS [1]

 

Temperature range

Mesophile

TAS [1]

 

Optimum temperature

37°C

TAS [1]

MIGS-6.3

Salinity

Not reported

IDA

MIGS-22

Oxygen requirement

Strictly anaerobic

TAS [1]

 

Carbon source

Asaccharolytic

TAS [1]

 

Energy source

Heterotrophic

NAS

MIGS-6

Habitat

Host

IDA

MIGS-15

Biotic relationship

Free living

IDA

 

Pathogenicity

Unknown

 
 

Biosafety level

2

NAS

MIGS-14

Isolation

Human brain abscess

NAS

MIGS-4

Geographic location

Marseille, France

IDA

MIGS-5

Sample collection time

2007

IDA

MIGS-4.1

Latitude

43°18 N

IDA

MIGS-4.1

Longitude

5°23 E

IDA

MIGS-4.3

Depth

Surface

IDA

MIGS-4.4

Altitude

21 m above sea level

IDA

  1. Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [9]. If the evidence is IDA, then the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.