Table 5. Number of protein encoding genes of E. medicae WSM419 associated with the 21 general COG functional categories.
From: Complete genome sequence of the Medicago microsymbiont Ensifer (Sinorhizobium) medicae strain WSM419
Code | value | % age | Description |
|---|---|---|---|
J | 182 | 2.79 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 501 | 7.69 | Transcription |
L | 250 | 3.84 | Replication, recombination and repair |
B | 1 | 0.02 | Chromatin structure and dynamics |
D | 36 | 0.55 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.00 | Nuclear structure |
V | 56 | 0.86 | Defense mechanisms |
T | 247 | 3.79 | Signal transduction mechanisms |
M | 287 | 4.40 | Cell wall/membrane biogenesis |
N | 66 | 1.01 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | 1 | 0.02 | Extracellular structures |
U | 106 | 1.63 | Intracellular trafficking and secretion |
O | 178 | 2.73 | Posttranslational modification, protein turnover, chaperones |
C | 336 | 5.15 | Energy production and conversion |
G | 582 | 8.93 | Carbohydrate transport and metabolism |
E | 622 | 9.54 | Amino acid transport and metabolism |
F | 109 | 1.67 | Nucleotide transport and metabolism |
H | 196 | 3.01 | Coenzyme transport and metabolism |
I | 209 | 3.21 | Lipid transport and metabolism |
P | 296 | 4.54 | Inorganic ion transport and metabolism |
Q | 159 | 2.44 | Secondary metabolites biosynthesis, transport and catabolism |
R | 687 | 10.54 | General function prediction only |
S | 528 | 8.10 | Function unknown |
- | 1,519 | 23.30 | Not in COGs |