Table 4. Number of genes associated with the general COG functional categories
From: Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134T)
Code | Value | %age | Description |
|---|---|---|---|
J | 144 | 5.6 | Translation, ribosomal structure and biogenesis |
A | 1 | 0.0 | RNA processing and modification |
K | 160 | 6.3 | Transcription |
L | 100 | 3.9 | Replication, recombination and repair |
B | 1 | 0.0 | Chromatin structure and dynamics |
D | 22 | 0.9 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 53 | 2.1 | Defense mechanisms |
T | 89 | 3.5 | Signal transduction mechanisms |
M | 93 | 3.6 | Cell wall/membrane biogenesis |
N | 46 | 0.0 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 0 | 0.0 | Extracellular structures |
U | 42 | 1.6 | Intracellular trafficking and secretion |
O | 79 | 3.1 | Posttranslational modification, protein turnover, chaperones |
C | 110 | 4.3 | Energy production and conversion |
G | 210 | 8.2 | Carbohydrate transport and metabolism |
E | 162 | 6.3 | Amino acid transport and metabolism |
F | 68 | 2.7 | Nucleotide transport and metabolism |
H | 93 | 3.6 | Coenzyme transport and metabolism |
I | 54 | 1.1 | Lipid transport and metabolism |
P | 121 | 4.7 | Inorganic ion transport and metabolism |
Q | 23 | 0.9 | Secondary metabolites biosynthesis, transport and catabolism |
R | 207 | 8.1 | General function prediction only |
S | 141 | 5.5 | Function unknown |
- | 728 | 28.5 | Not in COGs |