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Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1T (= DSM 45190T)

Figure 1.

Phylogenetic tree highlighting the position of C. maris relative to type strains of other species within the genus Corynebacterium. Species with at least one publicly available genome sequence (not necessarily the type strain) are highlighted in bold face. The tree is based on sequences aligned by the RDP aligner and utilizes the Jukes-Cantor corrected distance model to construct a distance matrix based on alignment model positions without alignment inserts, using a minimum comparable position of 200. The tree is built with RDP Tree Builder, which utilizes Weighbor [8] with an alphabet size of 4 and length size of 1,000. The building of the tree also involves a bootstrapping process repeated 100 times to generate a majority consensus tree [9]. Rhodococcus equi (X80614) was used as an outgroup.

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