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Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Complete genome sequence of Anabaena variabilis ATCC 29413

Figure 1.

16S phylogenetic tree highlighting the position of Anabaena variabilis ATCC 29413 relative to other cyanobacterial strains. Strains in blue have been sequenced and the 16S rRNA IMG locus tag is shown in parentheses after the strain. GenBank accession numbers are provided for 16S rRNA genes in strains that do not have a complete genome sequence (shown in black). The tree was made with sequences aligned by the RDP aligner, with the Jukes-Cantor corrected distance model, to construct a distance matrix based on alignment model positions, without alignment inserts, and uses a minimum comparable position of 200. The tree is built with RDP Tree Builder, which uses Weighbor [26] with an alphabet size of 4 and length size of 1,000. Bootstrapping (100 times) was used to generate a majority consensus tree [27]. Bootstrap values over 60 are shown. Gleothece violaceus PCC 7421 was used as the outgroup.

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