Skip to main content

Table 2. Genome sequencing project information

From: Complete genome sequence of Desulfocapsa sulfexigens, a marine deltaproteobacterium specialized in disproportionating inorganic sulfur compounds

MIGS ID Characteristic Details
MIGS-28 Libraries used 2kb (pUC19) and 40kb (pcc1FOS) Sanger and 454 standard libraries
MIGS-29 Sequencing platform ABI-3730, 454 GS FLX Titanium
MIGS-31.2 Sequencing coverage 1.1× Sanger 40kb insert, 31.3× pyrosequencing
MIGS-31 Finishing Quality Finished
MIGS-30 Assembler gsAssembler (Newbler) version 2.5.3
MIGS-32 Gene calling method IMG-ER pipeline [27](CRISPR: CRT [28] and PILERCR [29]; tRNAs: tRNAScan-SE-1.23 [30]; rRNA: RNAmmer [31]; other genes: Prodigal [32])
  GenBank ID CP003985, CP003986
  GenBank date of release 14.01.2013
  GOLD ID Gi18068
  NCBI project ID 91121
  IMG Taxon ID 2512875001
MIGS-13 Source material identifier DSM 10523T
  Project relevance Sulfur cycle