Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

Table 4b. Nucleotide content and gene count levels of Thermus thermophilus JL-18 genome

Attribute	Value	% of total^a
Genome size (bp)	2,311,212	100.00
DNA coding region (bp)	2,172,588	94.00
DNA G+C content (bp)	1,594,227	68.98
Total genes^b	2,508	100.00
RNA genes	56	2.23
Protein-coding genes	2,452	97.77
Pseudogenes	50	1.99
Genes in paralog clusters	1,069	42.62
Genes with function prediction	1,979	78.91
Genes assigned to COGs	1,992	79.43
Genes assigned Pfam domains	1,962	78.23
Genes with signal peptides	464	18.5
Genes with transmembrane helices	518	20.65
CRISPR repeats	3

^aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.
^bPseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.

ISSN: 2524-6372