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Table 3(c). Number of Thermus oshimai JL-2 genes associated with the 25 general COG functional categories

From: Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

Code

Value

%age

Description

J

146

6.67

Translation

A

4

0.18

RNA processing and modification

K

114

5.21

Transcription

L

117

5.35

Replication, recombination and repair

B

2

0.09

Chromatin structure and dynamics

D

35

1.60

Cell cycle control, mitosis and meiosis

Y

0

0

Nuclear structure

V

25

1.14

Defense mechanisms

T

76

3.47

Signal transduction mechanisms

M

90

4.11

Cell wall/membrane biogenesis

N

23

1.05

Cell motility

Z

1

0.05

Cytoskeleton

W

0

0

Extracellular structures

U

44

2.01

Intracellular trafficking and secretion

O

85

3.88

Posttranslational modification, protein turnover, chaperones

C

154

7.04

Energy production and conversion

G

132

6.03

Carbohydrate transport and metabolism

E

219

10.01

Amino acid transport and metabolism

F

74

3.38

Nucleotide transport and metabolism

H

126

5.76

Coenzyme transport and metabolism

I

89

4.07

Lipid transport and metabolism

P

99

4.52

Inorganic ion transport and metabolism

Q

51

2.33

Secondary metabolites biosynthesis, transport and catabolism

R

289

13.21

General function prediction only

S

193

8.82

Function unknown

-

545

21.39

Not in COGs

  1. aThe total is based on the total number of protein coding genes in the annotated genome.