Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

Table 3(b). Nucleotide content and gene count levels of Thermus oshimai JL-2 genome

Attribute	Value	% of Total^a
Genome size (bp)	2,401,329	100.00
DNA coding region (bp)	2,251,025	93.74
DNA G+C content (bp)	1,646,250	68.56
Total genes^b	2,548	100.00
RNA genes	60	2.35
Protein-coding genes	2,488	97.65
Pseudogenes	53	2.08
Genes in paralog clusters	1,099	43.13
Genes with function prediction	2,014	79.04
Genes assigned to COGs	2,003	78.61
Genes assigned Pfam domains	1,998	78.41
Genes with signal peptides	862	33.83
Genes with transmembrane helices	511	20.05
CRISPR repeats	5

^aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome.
^bPseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count.

ISSN: 2524-6372