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Figure 7. | Standards in Genomic Sciences

Figure 7.

From: Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling

Figure 7.

Thermus oshimai JL-2 gene Theos_1053 encodes a Copper-containing nitrite reductase. Amino acid sequences of known Cu-containing nitrite reductases from Pseudomonas aureofaciens (P. aureofaciens, GI: 287907), Achromobacter cycloclastes (A. cycloclastes, GI: 157835402), Rhodobacter sphaeroides ATCC 17025 (R. sphaeroides 17025, GI: 146277634), Rhodobacter sphaeroides KD131 (R. sphaeroides KD131, GI: 221638756), Alcaligenes faecalis (A. faecalis, GI: 393758960), Alcaligenes xylosoxidans (A. xylosoxidans, GI: 422318032), Nitrosomonas europaea (N. europaea, GI: 30248928), Neisseria meningitidis Z2491 (N. meningitidis Z2491, GI: 218768658) and Thermus scotoductus SA-01 (T. scotoductus SA-01, GI: 320450829) were aligned using Muscle v3.8.31 [51] along with Thermus oshimai JL-2 (T. oshimai JL-2, GI: 410732282) Theos_1053. Putative copper-binding residues are indicated with downward arrows according to their classes: 1: type 1 (blue) Cu; 2: type 2 (nonblue) Cu [49]. Numbers on left and right of the alignments refer to positions in the alignment. Asterisk (*) indicates the M→Q substitution in T. oshimai JL-2 and T. scotoductus SA-01.

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Environmental Microbiome

ISSN: 2524-6372