Table 4. Numbers of genes associated with the general COG functional categories.
From: Complete genome sequence of Methanocorpusculum labreanum type strain Z
Code | value | % of total | COG category |
|---|---|---|---|
E | 130 | 7.4 | Amino acid transport and metabolism |
G | 54 | 3.1 | Carbohydrate transport and metabolism |
D | 10 | 0.6 | Cell cycle control, cell division, chromosome partitioning |
N | 5 | 0.3 | Cell motility |
M | 35 | 2.0 | Cell wall/membrane/envelope biogenesis |
B | 2 | 0.1 | Chromatin structure and dynamics |
H | 129 | 7.3 | Coenzyme transport and metabolism |
Z | 0 | 0.0 | Cytoskeleton |
V | 13 | 0.7 | Defense mechanisms |
C | 134 | 7.6 | Energy production and conversion |
W | 0 | 0.0 | Extracellular structures |
S | 172 | 9.7 | Function unknown |
R | 219 | 12.4 | General function prediction only |
P | 95 | 5.4 | Inorganic ion transport and metabolism |
U | 17 | 1.0 | Intracellular trafficking, secretion, and vesicular transport |
I | 24 | 1.4 | Lipid transport and metabolism |
Y | 0 | 0.0 | Nuclear structure |
F | 49 | 2.8 | Nucleotide transport and metabolism |
O | 57 | 3.2 | Posttranslational modification, protein turnover, chaperones |
A | 0 | 0.0 | RNA processing and modification |
L | 65 | 3.7 | Replication, recombination and repair |
Q | 8 | 0.5 | Secondary metabolites biosynthesis, transport and catabolism |
T | 30 | 1.7 | Signal transduction mechanisms |
K | 77 | 4.4 | Transcription |
J | 147 | 8.3 | Translation, ribosomal structure and biogenesis |
- | 293 | 16.6 | Not in COGs |