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Table 1. Classification and general features of J. marina En5T according to the MIGS recommendations [24].

From: High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)

MIGS ID

Property

Term

Evidence code

 

Current classification

Domain Bacteria

TAS [25]

 

Phylum Bacteroidetes

TAS [26,27]

 

Class Flavobacteriia

TAS [2830]

 

Order Flavobacteriales

TAS [27,31]

 

Family Flavobacteriaceae

TAS [5,6,32,33]

 

Genus Joostella

TAS [1]

MIGS-7

 

Species Joostella marina

TAS [1]

MIGS-12

Subspecific genetic lineage (strain)

En5T

TAS [1]

 

Reference for biomaterial

Quan et al. 2008

TAS [1]

 

Gram stain

negative

TAS [1]

 

Cell shape

rod-shaped

TAS [1]

 

Motility

non-motile

TAS [1]

 

Sporulation

non-sporulating

TAS [1]

 

Temperature range

10–37°C

TAS [1]

 

Optimum temperature

30°C

TAS [1]

MIGS-22

Salinity

0–15% NaCl, optimally 1–3% NaCl

TAS [1]

 

Relationship to oxygen

obligate aerobe

TAS [1]

 

Carbon source

monosaccarides

TAS [1]

MIGS-6

Energy metabolism

not reported

 

MIGS-6.2

Habitat

mud

TAS [1]

MIGS-15

pH

optimum 5.3 – 7.6

TAS [1]

MIGS-14

Biotic relationship

free living

TAS [1]

MIGS-16

Known pathogenicity

not reported

 

MIGS-18

Specific host

none

NAS

 

Health status of host

not reported

 

MIGS-19

Biosafety level

1

TAS [34]

MIGS-23.1

Trophic level

not reported

 

MIGS-4

Isolation

coastal seawater

TAS [1]

MIGS-5

Geographic location

East Sea of Korea

TAS [1]

MIGS-4.1

Time of sample collection

May 2007

NAS

MIGS-4.2

Latitude

not reported

 

MIGS-4.3

Longitude

not reported

 

MIGS-4.4

Depth

100 m

TAS [1]

 

Altitude

−100 m

TAS [1]

  1. Evidence codes - TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). Evidence codes are from the Gene Ontology project [35].