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Figure 1. | Standards in Genomic Sciences

Figure 1.

From: Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes finegoldii type strain (AHN2437T)

Figure 1.

Phylogenetic tree highlighting the position of A. finegoldii relative to the type strains of the other species within the family Rikenellaceae. The tree was inferred from 1,432 aligned characters [17,18] of the 16S rRNA gene sequence under the maximum likelihood (ML) criterion [19]. Rooting was done initially using the midpoint method [20] and then checked for its agreement with the current classification (Table 1). The branches are scaled in terms of the expected number of substitutions per site. Numbers adjacent to the branches are support values from 1,000 ML bootstrap replicates [21] (left) and from 1,000 maximum-parsimony bootstrap replicates [22] (right) if larger than 60%. Lineages with type strain genome sequencing projects registered in GOLD [23] are labeled with one asterisk, those also listed as ‘Complete and Published’ with two asterisks. See also the species the not yet validly published names described together with their genome sequences in [6].

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