Table 4. Number of genes associated with the general COG functional categories
From: Genome of the marine alphaproteobacterium Hoeflea phototrophica type strain (DFL-43T)
Code | Value | %age | Description |
|---|---|---|---|
J | 178 | 4.58 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 274 | 7.05 | Transcription |
L | 162 | 4.17 | Replication, recombination and repair |
B | 2 | 0.05 | Chromatin structure and dynamics |
D | 27 | 0.69 | Cell cycle control, cell division, chromosome partitioning |
Y | - | - | Nuclear structure |
V | 39 | 1.00 | Defense mechanisms |
T | 175 | 4.50 | Signal transduction mechanisms |
M | 205 | 5.27 | Cell wall/membrane/envelope biogenesis |
N | 60 | 1.54 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | - | - | Extracellular structures |
U | 66 | 1.70 | Intracellular trafficking, secretion, and vesicular transport |
O | 135 | 3.47 | Posttranslational modification, protein turnover, chaperones |
C | 226 | 5.81 | Energy production and conversion |
G | 325 | 8.36 | Carbohydrate transport and metabolism |
E | 405 | 10.41 | Amino acid transport and metabolism |
F | 80 | 2.06 | Nucleotide transport and metabolism |
H | 157 | 4.04 | Coenzyme transport and metabolism |
I | 188 | 4.83 | Lipid transport and metabolism |
P | 178 | 4.58 | Inorganic ion transport and metabolism |
Q | 130 | 3.34 | Secondary metabolites biosynthesis, transport and catabolism |
R | 524 | 13.47 | General function prediction only |
S | 353 | 9.08 | Function unknown |
- | 773 | 18.00 | Not in COGs |