Table 2
8:00–9:00 | Coffee & Breakfast |
9:00–10:30 | GSC Outreach II |
Standards Development and Implementation in Genomic and Metagenomic Databases and Applications (Submitted Abstracts)Session Chair: [Norman Morrison] | |
Judith Blake (The Jackson Laboratory, USA) & Suzanna Lewis (Lawrence Berkeley National Laboratory, USA) | |
Gene Ontology: Functional Annotation For Comparative Genomics, GSC15p29 | |
Evangelos Pafilis (Hellenic Center of Marine Research, Greece) | |
ENVIRONMENTS: identification of environment descriptive terms in text, GSC15p12 | |
Susanna-Assunta Sansone (University of Oxford, UK) | |
The ISA Commons: curate, visualize, analyze, share and publish, GSC15p15 | |
Trish Whetzel (BMIR Stanford University, USA) | |
NCBO Technology: Powering Semantically Aware Applications to enable Standards Driven Research, GSC15p22 | |
K. Eric Wommack (University of Delaware, USA) | |
The VIROME Compare-inator: a web tool for exploring the diversity of viral communities, GSC15p21 | |
Hilmar Lapp (National Evolutionary Synthesis Center, USA) | |
The Blessing and the curse: handshaking between general and specialist data repositories | |
10:00–10:30 | Coffee Break & Poster Session |
10:30–12:00 | GSC Outreach III |
Standards Development and New Standards in Genomic and Metagenomic Databases and Applications (Submitted Abstracts) Session Chair: Linda Amaral-Zettler | |
Granger Sutton (J. Craig Venter Institute, USA) | |
Standards for Pan-Genome Data Repositories, GSC15p18 | |
Folker Meyer (Argonne National Laboratory and University of Chicago, USA) & Tatiana Tatusova (National Center for Biotechnology Information, USA) | |
Pan-genome: a new paradigm in microbiology, GSC15p28 | |
Cynthia Parr (Smithsonian Institution, USA) | |
Encyclopedia of Life: Applying concepts from Amazon.com and LEGO to biodiversity informatics, GSC15p17 | |
Katharine Barker (Smithsonian Institution, USA) | |
The Global Genome Biodiversity Network (GGBN) and the Global Genome Initiative (GGI): Building the Infrastructure for the future of Genomics, GSC15p16 | |
Marnix Medema (Max Planck Institute Bremen, Germany) | |
MIBiG: Minimal Information about a Biosynthetic Gene Cluster, GSC15p02 | |
Markus Göker (DSMZ, Germany) | |
Proposal for a Minimum Information on a Phenotype MicroArray Study (MIPS) standard, GSC15p09 | |
Michael Schneider (Max Planck Institute Bremen, Germany) | |
A MIxS and DwC compliant biodiversity Reference Data Model to support the community in implementing the database layer, GSC15p14 | |
12:00–13:30 | Lunch |
13:30–15:30 | Government Panel |
Discussion Topic: Where are standards in genomics most needed now?Session Chairs: Lynette Hirschman and Lynn Schriml | |
Panel Chair: Dan Drell (DOE) | |
Session Members: Susan Gregurick (DOE), Adam Phillippy (DHS), Alison Yao (NIAID), Ann Lichens-Park (NIFA/USDA), Lita Proctor (Common Fund), Marc Allard (FDA), Marc Salit (NIST), Patricia Reichelderfer (NICHD), Vivien Bonazzi (NHGRI), Sylvia Spengler (NSF/CISE) | |
15:30–16:00 | Coffee Break & Poster Session |
16:00–17:00 | Panel Discussion |
Proposed topics | |
1. The need for new standards: PanGenomes | |
2. Genome Sequence Annotation Standards | |
17:00 | Day 2 Wrap Up. Close of GSC15 plenary sessions. |
Official Handoff of GSC15 to GSC16 to be held in Brisbane, Australia |