Table 1
8:00–9:00 | Arrival, Registration, Poster setup, Coffee & Breakfast |
9:00–9:15 | Meeting Opening: Lynn Schriml and Ilene Mizrachi |
Jim Ostell of NCBI opens GSC15 | |
9:15–9:45 | Standards in the INSDC |
Ilene Mizrachi (NCBI) and Petra Ten Hoopen (EBI) | |
9:45–10:00 | GSC Introduction |
Dawn Field (NERC Centre for Ecology and Hydrology, UK) | |
10:00–10:30 | GSC Groups I: Success stories of GSC standards in Environmental Genomics |
Session Chair: Dawn Field | |
Konstantinos Liolios (DOE Joint Genomes Institute, USA) | |
The Genomes OnLine Database (GOLD) v.5: status of genomic and metagenomic projects and their associated metadata, GSC15p20 | |
Jack Gilbert (Argonne National Laboratory and University of Chicago, USA) | |
The Hospital Microbiome Project — understanding microbial transmission and ecology in a health care environment, GSC15p38 | |
Frank Oliver Glöckner (Max Planck Institute Bremen and Jacobs University Bremen, Germany) | |
Micro B3: Marine Microbial Biodiversity, Bioinformatics, Biotechnology, GSC15p05 | |
10:30–11:00 | Coffee Break & Poster Session |
11:00–12:30 | Standards in the HMP and Human Microbiome Research |
Session Chairs: Rob Knight and Owen White | |
Owen White (University of Maryland School of Medicine, USA) | |
Utilization of Standardized Vocabularies in the Management of Human Microbiome Data, GSC15p43 | |
Rob Knight (University of Colorado Boulder, USA) | |
Using standards-compliant metadata to combine human microbiome studies, GSC15p32 | |
Curtis Huttenhower (Harvard School of Public Health, USA) | |
Cataloging genes and pathways in the human microbiome, GSC15p40 | |
Jack Gilbert (Argonne National Laboratory & University of Chicago, USA) | |
The Earth Microbiome Project and the importance of data standards in modeling the planets microbiome, GSC15p37 | |
Susan Holmes (Stanford University, USA) | |
Reproducible research for data normalization, analyses and simulations, GSC15p39 | |
12:30–13:30 | Lunch |
13:30–14:15 | Introduction: Owen White] |
Keynote Speaker: Steven Salzberg | |
(Johns Hopkins University School of Medicine, USA) | |
14:15–15:00 | GSC Groups II: GSC Standards ImplementationSession Chair: [Frank Oliver Glöckner] |
Renzo Kottmann (Max Planck Institute Bremen, Germany) | |
Earth Sampling App for Ocean Sampling Day, GSC15p27 | |
George Garrity (Michigan State University, USA) | |
Standards in Genomic Sciences (SIGS), GSC15p34 | |
Antonio Gonzalez (University of Colorado Boulder, USA) | |
Next generation software pipelines and reproducibility for microbial community analysis, GSC15p07 | |
Pelin Yilmaz (Max Planck Institute Bremen, Germany) | |
Phylogeny, ecology and biogeography of marine bacterial and archaeal clades, GSC15p33 | |
15:00–15:30 | Coffee Break & Poster Session |
15:30–17:00 | GSC Outreach I: Standards Development and Implementation in Genomic and Metagenomic Research (Submitted Abstracts) Session Chair: [Susanna-Assunta Sansone] |
Anjantte Johnston (National Center for Biotechnology Information, USA) | |
GSC-Compliance at NCBI, GSC15p11 | |
Heather Huot-Creasy (University of Maryland School of Medicine, USA) | |
The Human Microbiome Project Metadata Catalog, GSC15p19 | |
Tonia Korves (The MITRE Corporation, USA) | |
Applying Publicly Available Genomic Metadata to Disease Outbreak Investigation, GSC15p06 | |
Adam Phillippy (University of Maryland, USA) | |
Sequencing and analysis standards for microbial forensics, GSC15p26 | |
Junhua Li (BGI, China) | |
A new version of human gut microbial gene catalog integrating with 3 continent populations and human gut-related bacterial genomes, GSC15p30 | |
17:00–17:30 | Poster Session Flash talks (2 min, 1 slide) |
18:00 | Day 1 Wrap Up |
18:30–21:00- | GSC15 Reception |
Evening reception, food and drink provided by the GSC. | |
Lebanese Taverna Restaurant | |
7141 Arlington Road, Bethesda, MD |