Table 8. Count of genes in COGs that bear protein sequence homology to target lignocellulolytic genes of interest.

COG1472

11

23

Beta-glucosidase-related glycosidases

COG3250

11

7

Beta-galactosidase/beta-glucuronidase

COG5001

9

9

Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

COG1028

4

33

Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

COG0300

3

2

Short-chain dehydrogenases of various substrate specificities

COG4221

3

2

Short-chain alcohol dehydrogenase of unknown specificity

COG1012

2

11

NAD-dependent aldehyde dehydrogenases

COG0677

2

3

UDP-N-acetyl-D-mannosaminuronate dehydrogenase

COG3384

2

3

Uncharacterized conserved protein

COG0280

1

3

Phosphotransacetylase

COG1344

1

3

Flagellin and related hook-associated proteins

COG3325

1

2

Chitinase

COG0277

1

1

FAD/FMN-containing dehydrogenases

COG0179

1

2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

COG1874

1

Beta-galactosidase

COG2132

1

Putative multicopper oxidases

COG1129

20

ABC-type sugar transport system, ATPase component

COG2723

11

Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase

COG0411

9

ABC-type branched-chain amino acid transport systems, ATPase component

COG0673

8

Predicted dehydrogenases and related proteins

COG0036

4

Pentose-5-phosphate-3-epimerase

COG1455

4

Phosphotransferase system cellobiose-specific component IIC

COG1486

4

Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases

COG2200

4

FOG: EAL domain

COG0366

3

Glycosidases

COG1004

3

Predicted UDP-glucose 6-dehydrogenase

COG3842

3

ABC-type spermidine/putrescine transport systems, ATPase components

COG3845

3

ABC-type uncharacterized transport systems, ATPase components

COG0435

2

Predicted glutathione S-transferase

COG0583

2

Transcriptional regulator

COG0812

2

UDP-N-acetylmuramate dehydrogenase

COG3836

2

2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

COG4213

2

ABC-type xylose transport system, periplasmic component

COG4214

2

ABC-type xylose transport system, permease component

COG0376

1

Catalase (peroxidase I)

COG0410

1

ABC-type branched-chain amino acid transport systems, ATPase component

COG1640

1

4-alpha-glucanotransferase

COG1921

1

Selenocysteine synthase [seryl-tRNASer selenium transferase]

COG1960

1

Acyl-CoA dehydrogenases

COG2368

1

Aromatic ring hydroxylase

COG2373

1

Large extracellular alpha-helical protein

Total Result

54

197