From: Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron
ID | SG only | R | SG + Fe | Description | |
---|---|---|---|---|---|
Enriched in SG+Fe FACs | |||||
pfam00005 | 2,409 | −7.38 | 8.10e-14 | 3,025 | ABC transpoerter |
pfam00528 | 1,817 | −7.36 | 9.02e-14 | 2,348 | Bacterial binding protein-dependent transport systems |
pfam02653 | 394 | −6.24 | 2.23e-10 | 605 | Bacterial binding protein-dependent transport systems |
pfam00106 | 420 | −4.88 | 5.38e-07 | 589 | short-chain dehydrogenases/reductases family |
pfam01979 | 163 | −5.55 | 1.44e-08 | 287 | large metal dependent hydrolase superfamily |
pfam08352 | 99 | −6.43 | 6.20e-11 | 218 | C-terminus of oligopeptide ABC transporter ATP binding proteins |
pfam02894 | 146 | −4.1 | 2.03e-05 | 231 | Oxidoreductase family, C-terminal alpha/beta domain |
pfam02782 | 113 | −4.33 | 7.56e-06 | 193 | FGGY carbohydrate kinase family |
pfam00395 | 130 | −3.98 | 3.39e-05 | 208 | S-layer homology domain |
pfam01266 | 93 | −3.77 | 8.17e-05 | 156 | FAD dependent oxidoreductase family |
pfam02801 | 47 | −4.13 | 1.79e-05 | 99 | Beta-ketoacyl-ACP synthase (fatty acid synthesis) |
pfam00404 | 2 | −6.02 | 8.86e-10 | 43 | Dockerin: protein domain in cellulosome cellular structure |
pfam01799 | 24 | −3.71 | 1.02e-04 | 59 | [2Fe-2S] binding domain |
pfam03632 | 19 | −3.8 | 7.32e-05 | 52 | glycoside hydrolase family 65 |
pfam08659 | 1 | −5.41 | 3.23e-08 | 33 | polyketide synthase domain, catalyses the first step in the reductive modification of the beta-carbonyl centers in the growing polyketide chain |
Enriched in SG only FACs | |||||
pfam00990 | 697 | 5.95 | 1.33e-09 | 508 | GGDEF domain, cyclic di-GMP synthesis involved in intracellular signaling |
pfam03466 | 499 | 6.29 | 1.60e-10 | 330 | LysR substrate binding domain, similar to periplasmic binding protein |
pfam00126 | 476 | 5.71 | 5.71e-09 | 326 | Helix-turn-helix DNA binding domain |
pfam00583 | 1,048 | 3.88 | 5.26e-05 | 905 | Acetyltransferase (or transacetylase) |
pfam00989 | 569 | 3.89 | 4.92e-05 | 459 | PAS domain, signal sensor |
pfam00563 | 262 | 5.43 | 2.89e-08 | 157 | EAL domain, possible diguanylate phosphodiesterase with metal-binding site |
pfam01473 | 135 | 8.26 | 1.11e-16 | 31 | Putative cell wall binding repeat |
pfam02311 | 405 | 3.78 | 7.82e-05 | 314 | rabinose-binding and dimerization domain of the AraC regulatory protein |
pfam00665 | 201 | 4.53 | 2.94e-06 | 124 | Retroviral integrase |
pfam02378 | 145 | 4.25 | 1.08e-05 | 84 | Phosphotransferase system, EIIC, part of a sugar-specific permease system |
pfam00801 | 163 | 3.71 | 1.03e-04 | 106 | Polycystic-kidney disease domain, usually involved in mediating protein-protein interactions |
pfam01797 | 119 | 3.84 | 6.07e-05 | 69 | Transposase IS200, for transposition of insertion elements |
pfam01609 | 119 | 3.76 | 8.44e-05 | 70 | Transposase DDE domain, for transposition of insertion elements |
pfam01011 | 75 | 4.54 | 2.83e-06 | 30 | beta propeller, found in several enzymes which utilize pyrrolo-quinoline quinone as a prosthetic group |
pfam00367 | 80 | 4.35 | 6.80e-06 | 35 | phosphotransferase system, EIIB |
pfam02302 | 105 | 3.69 | 1.13e-04 | 60 | phosphoenolpyruvate: sugar phosphotransferase system (PTS) system, Lactose/Cellobiose specific IIB subunit |
pfam09681 | 47 | 5.93 | 1.53e-09 | 5 | N-terminal phage replisome organizer, origin of phage replication |
pfam01978 | 83 | 3.83 | 6.47e-05 | 42 | sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter |
pfam03143 | 52 | 3.75 | 8.81e-05 | 21 | GTP-binding elongation factor family |
pfam09820 | 35 | 4.41 | 5.09e-06 | 7 | predicted AAA-ATPase domain |
pfam08350 | 33 | 4 | 3.22e-05 | 8 | domain of unknown function, so far found only at the C-terminus of archaean proteins |
pfam08495 | 36 | 3.74 | 9.02e-05 | 11 | FIST N domain: novel sensory domain present in signal transduction proteins |
pfam09373 | 22 | 4.45 | 4.34e-06 | 1 | Pseudomurein-binding repeat, pseudomurein being a cell-wall structure |
pfam08004 | 18 | 3.96 | 3.71e-05 | 1 | domain of unknown function, so far found only among archaeal proteins |