From: Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron
 | SG only Metagenome | SG + Fe Metagenome | ||
---|---|---|---|---|
 | Number | % of Total | Number | % of Total |
DNA, total number of bases | 152,660,070 | 100.00% | 154,120,208 | 100.00% |
DNA coding number of bases | 130,438,005 | 85.44% | 136,080,382 | 88.29% |
DNA G+C number of bases | 62,858,797 | 41.18%* | 70,930,796 | 46.02%* |
DNA scaffolds | 57,147 | 100.00% | 65,160 | 100.00% |
CRISPR Count | 51 | Â | 4 | Â |
Genes total number | 197,271 | 100.00% | 193,491 | 100.00% |
Protein coding genes | 195,006 | 98.85% | 192,751 | 99.62% |
RNA genes | 2,265 | 1.15% | 740 | 0.38% |
rRNA genes | 294 | 0.15% | 16 | 0.01% |
5S rRNA | 106 | 0.05% | 9 | 0.00% |
16S rRNA | 75 | 0.04% | 3 | 0.00% |
18S rRNA | 1 | 0.00% | 4 | 0.00% |
tRNA genes | 1,971 | 1.00% | 724 | 0.37% |
Protein coding genes with function prediction | 127,406 | 64.58% | 129,389 | 66.87% |
without function prediction | 67,600 | 34.27% | 63,362 | 32.75% |
not connected to SwissProt Protein Product | 195,006 | 98.85% | 192,751 | 99.62% |
Protein coding genes with enzymes | 33,383 | 16.92% | 30,632 | 15.83% |
w/o enzymes but with candidate KO based enzymes | 26,793 | 13.58% | 32,919 | 17.01% |
Protein coding genes connected to KEGG pathways3 | 37,533 | 19.03% | 34,348 | 17.75% |
not connected to KEGG pathways | 157,473 | 79.83% | 15,8403 | 81.87% |
Protein coding genes connected to KEGG Orthology (KO) | 63,949 | 32.42% | 57,111 | 29.52% |
not connected to KEGG Orthology (KO) | 131,057 | 66.44% | 135,640 | 70.10% |
Protein coding genes connected to MetaCyc pathways | 32,243 | 16.34% | 29,552 | 15.27% |
not connected to MetaCyc pathways | 162,763 | 82.51% | 163,199 | 84.34% |
Protein coding genes with COGs3 | 121,020 | 61.35% | 123,077 | 63.61% |
with Pfam3 | 115,645 | 58.62% | 118,589 | 61.29% |
with TIGRfam3 | 33,743 | 17.10% | 33,969 | 17.56% |
in internal clusters | 77,655 | 39.36% | 73,856 | 38.17% |
Protein coding genes coding signal peptides | 48,556 | 24.61% | 49,644 | 25.66% |
Protein coding genes coding transmembrane proteins | 43,693 | 22.15% | 43,726 | 22.60% |
COG clusters | 4,125 | 84.65% | 3,974 | 81.55% |
KOG clusters | 0 | 0.00% | 0 | 0.00% |
Pfam clusters | 4,447 | 37.33% | 4,293 | 36.04% |
TIGRfam clusters | 2,580 | 64.13% | 2,489 | 61.87% |