Table 4. Number of genes associated with the 25 general COG functional categories
From: The Genomic Blueprint of Salmonella enterica subspecies enterica serovar Typhi P-stx-12
Code | Value | %agea | Description |
|---|---|---|---|
J | 182 | 3.9 | Translation |
A | 1 | 0.0 | RNA processing and modification |
K | 307 | 6.5 | Transcription |
L | 191 | 4.1 | Replication, recombination and repair |
B | 0 | 0.0 | Chromatin structure and dynamics |
D | 33 | 0.7 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0.0 | Nuclear structure |
V | 48 | 1.0 | Defense mechanisms |
T | 181 | 3.9 | Signal transduction mechanisms |
M | 246 | 5.2 | Cell wall/membrane biogenesis |
N | 122 | 2.6 | Cell motility |
Z | 0 | 0.0 | Cytoskeleton |
W | 1 | 0.0 | Extracellular structures |
U | 139 | 3.0 | Intracellular trafficking and secretion |
O | 156 | 3.3 | Posttranslational modification, protein turnover, chaperones |
C | 262 | 5.6 | Energy production and conversion |
G | 352 | 7.5 | Carbohydrate transport and metabolism |
E | 349 | 7.4 | Amino acid transport and metabolism |
F | 89 | 1.9 | Nucleotide transport and metabolism |
H | 176 | 3.8 | Coenzyme transport and metabolism |
I | 85 | 1.8 | Lipid transport and metabolism |
P | 193 | 4.1 | Inorganic ion transport and metabolism |
Q | 65 | 1.4 | Secondary metabolites biosynthesis, transport and catabolism |
R | 421 | 9.0 | General function prediction only |
S | 355 | 0.1 | Function unknown |
- | 1157 | 24.7 | Not in COGs |