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Table 1. Classification and general features of S. enterica serovar Typhi P-stx-12

From: The Genomic Blueprint of Salmonella enterica subspecies enterica serovar Typhi P-stx-12

MIGS ID

Property

Term

Evidence codea

 

Current classification

Domain Bacteria

TAS [13]

 

Phylum Proteobacteria

TAS [14]

 

Class Gammaproteobacteria

TAS [15,16]

 

Order Enterobacteriales

TAS [17]

 

Family Enterobacteriaceae

TAS [18–20]

 

Genus Salmonella

TAS [18,21–23]

 

Species Salmonella enterica

TAS [23,24]

 

Subspecies Salmonella enterica enterica

TAS [23,24]

 

Gram stain

negative

TAS [6]

 

Cell shape

Rod-shape

TAS [6]

 

Motility

Motile

TAS [6]

 

Sporulation

Non-spore forming

TAS [6]

 

Temperature range

7°C–45°C

TAS [6]

 

Optimum temperature

35°C–37°C

TAS [6]

 

Carbon source

Carbohydrates (glucose)

TAS [6]

 

Energy source

Chemoorganotrophic

TAS [6]

 

Terminal electron receptor

Not reported

 

MIGS-6

Habitat

Multi-organ pathogen that inhabits the Peyer’s patches (Lymph node) of the small intestine, liver, spleen, bone marrow, bile and blood stream of infected human.

NAS

MIGS-6.3

Salinity

Survives for days at 0.85% NaCl.

NAS

MIGS-22

Oxygen

Facultative anaerobe

TAS [6]

MIGS-15

Biotic relationship

Human restricted

NAS

MIGS-14

Pathogenicity

Pathogenic

TAS [25,26]

MIGS-4

Geographic location

Uttar Pradesh, Varanasi, India

IDA

MIGS-5

Sample collection time

November 2009

IDA

MIGS-4.1

Latitude

25° 19′ 60 N

IDA

MIGS-4.2

Longitude

83° 0′ 0 E

IDA

MIGS-4.3

Depth

Not reported

 

MIGS-4.4

Altitude

76 (meters)

IDA

  1. a) Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [27]. If the evidence code is IDA, then the property was directly observed for a living isolate by one of the authors or an expert mentioned in the acknowledgements.