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Table 4. Number of genes associated with the general COG functional categories

From: Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

Code Value %age Description
J 158 6.3 Translation, ribosomal structure and biogenesis
A 0 0.0 RNA processing and modification
K 156 6.2 Transcription
L 125 5.0 Replication, recombination and repair
B 2 0.1 Chromatin structure and dynamics
D 33 1.3 Cell cycle control, cell division, chromosome partitioning
Y 0 0.0 Nuclear structure
V 40 1.6 Defense mechanisms
T 228 9.1 Signal transduction mechanisms
M 142 5.7 Cell wall/membrane/envelope biogenesis
N 86 3.4 Cell motility
Z 0 0.0 Cytoskeleton
W 0 0.0 Extracellular structures
U 50 2.0 Intracellular trafficking, secretion, and vesicular transport
O 91 3.6 Posttranslational modification, protein turnover, chaperones
C 134 5.3 Energy production and conversion
G 296 11.8 Carbohydrate transport and metabolism
E 188 7.5 Amino acid transport and metabolism
F 67 2.7 Nucleotide transport and metabolism
H 77 3.1 Coenzyme transport and metabolism
I 60 2.4 Lipid transport and metabolism
P 77 3.1 Inorganic ion transport and metabolism
Q 26 1.1 Secondary metabolites biosynthesis, transport and catabolism
R 293 11.7 General function prediction only
S 182 7.3 Function unknown
- 658 22.5 Not in COGs