Skip to main content

Advertisement

Table 2. Genome sequencing project information

From: Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

MIGS ID Property Term
MIGS-31 Finishing quality Finished
MIGS-28 Libraries used Three genomic libraries: one 454 pyrosequence standard library, one 454 PE library (12 kb insert size), one Illumina library
MIGS-29 Sequencing platforms Illumina GAii, 454 GS FLX Titanium
MIGS-31.2 Sequencing coverage 283.3 × Illumina; 26.8 × pyrosequence
MIGS-30 Assemblers Newbler version 2.3, Velvet 0.7.63, phrap version SPS - 4.24
MIGS-32 Gene calling method Prodigal
  INSDC ID CP002868
  GenBank Date of Release August 12, 2011
  GOLD ID Gc01874
  NCBI project ID 46527
  Database: IMG-GEBA 2505679006
MIGS-13 Source material identifier DSM 7334
  Project relevance Tree of Life, GEBA