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Table 2. Genome sequencing project information

From: Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

MIGS ID

Property

Term

MIGS-31

Finishing quality

Finished

MIGS-28

Libraries used

Three genomic libraries: one 454 pyrosequence standard library, one 454 PE library (12 kb insert size), one Illumina library

MIGS-29

Sequencing platforms

Illumina GAii, 454 GS FLX Titanium

MIGS-31.2

Sequencing coverage

283.3 × Illumina; 26.8 × pyrosequence

MIGS-30

Assemblers

Newbler version 2.3, Velvet 0.7.63, phrap version SPS - 4.24

MIGS-32

Gene calling method

Prodigal

 

INSDC ID

CP002868

 

GenBank Date of Release

August 12, 2011

 

GOLD ID

Gc01874

 

NCBI project ID

46527

 

Database: IMG-GEBA

2505679006

MIGS-13

Source material identifier

DSM 7334

 

Project relevance

Tree of Life, GEBA