Table 4. Number of genes associated with the 25 general COG functional categories
From: Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.
Code | Value | %agea | Description |
|---|---|---|---|
J | 183 | 4.69 | Translation |
A | 2 | 0.05 | RNA processing and modification |
K | 199 | 5.10 | Transcription |
L | 183 | 4.69 | Replication, recombination and repair |
B | 2 | 0.05 | Chromatin structure and dynamics |
D | 45 | 1.15 | Cell cycle control, mitosis and meiosis |
Y | 0 | 0 | Nuclear structure |
V | 44 | 1.13 | Defense mechanisms |
T | 234 | 6.00 | Signal transduction mechanisms |
M | 272 | 6.97 | Cell wall/membrane biogenesis |
N | 142 | 3.64 | Cell motility |
Z | 0 | 0 | Cytoskeleton |
W | 0 | 0 | Extracellular structures |
U | 141 | 3.61 | Intracellular trafficking and secretion |
O | 168 | 4.31 | Posttranslational modification, protein turnover, chaperones |
C | 230 | 5.90 | Energy production and conversion |
G | 192 | 4.92 | Carbohydrate transport and metabolism |
E | 263 | 6.74 | Amino acid transport and metabolism |
F | 67 | 1.72 | Nucleotide transport and metabolism |
H | 141 | 3.61 | Coenzyme transport and metabolism |
I | 176 | 4.51 | Lipid transport and metabolism |
P | 147 | 3.77 | Inorganic ion transport and metabolism |
Q | 93 | 2.38 | Secondary metabolites biosynthesis, transport and catabolism |
R | 444 | 11.38 | General function prediction only |
S | 384 | 9.84 | Function unknown |
- | 95 | 2.44 | Not in COGs |