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Table 1. Classification and general features of Herbaspirillum massiliense strain JC206T according to the MIGS recommendations [21]

From: Non-contiguous finished genome sequence and description of Herbaspirillum massiliense sp. nov.

MIGS ID

Property

Term

Evidence codea

 

Current classification

Domain: Bacteria

TAS [22]

 

Phylum Proteobacteria

TAS [23]

 

Class Betaproteobacteria

TAS [24,25]

 

Order Burkholderiales

TAS [24,26]

 

Family Oxalobacteriaceae

TAS [24,27]

 

Genus Herbaspirillum

TAS [5,6]

 

Species Herbaspirillum massiliense

IDA

 

Type strain JC206T

IDA

 

Gram stain

Negative

IDA

 

Cell shape

Rod

IDA

 

Motility

Motile

IDA

 

Sporulation

Nonsporulating

IDA

 

Temperature range

Mesophile

IDA

 

Optimum temperature

37°C

IDA

MIGS-6.3

Salinity

Growth in BHI medium + 5% NaCl

IDA

MIGS-22

Oxygen requirement

Aerobic

IDA

 

Carbon source

Unknown

 
 

Energy source

Unknown

 

MIGS-6

Habitat

Human gut

IDA

MIGS-15

Biotic relationship

Free living

IDA

 

Pathogenicity

Unknown

 
 

Biosafety level

2

 

MIGS-14

Isolation

Human feces

 

MIGS-4

Geographic location

Senegal

IDA

MIGS-5

Sample collection time

September 2010

IDA

MIGS-4.1

Latitude

13.7167

IDA

MIGS-4.1

Longitude

− 16.4167

IDA

MIGS-4.3

Depth

Surface

IDA

MIGS-4.4

Altitude

51 m above sea level

IDA

  1. Evidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [28]. If the evidence is IDA, then the property was directly observed for a live isolate by one of the authors or an expert mentioned in the acknowledgements.