Table 4. Numbers of genes associated with the general COG functional categories.
From: Complete genome sequence of Staphylothermus marinus Stetter and Fiala 1986 type strain F1
Code | value | %age | Description |
|---|---|---|---|
E | 74 | 4.6 | Amino acid transport and metabolism |
G | 72 | 4.5 | Carbohydrate transport and metabolism |
D | 8 | 0.5 | Cell cycle control, cell division, chromosome partitioning |
N | 4 | 0.2 | Cell motility |
M | 23 | 1.4 | Cell wall/membrane/envelope biogenesis |
B | 2 | 0.1 | Chromatin structure and dynamics |
H | 53 | 3.3 | Coenzyme transport and metabolism |
Z | 0 | 0.0 | Cytoskeleton |
V | 17 | 1.1 | Defense mechanisms |
C | 92 | 5.7 | Energy production and conversion |
W | 0 | 0.0 | Extracellular structures |
S | 116 | 7.2 | Function unknown |
R | 199 | 12.4 | General function prediction only |
P | 85 | 5.3 | Inorganic ion transport and metabolism |
U | 12 | 0.7 | Intracellular trafficking, secretion, and vesicular transport |
I | 15 | 0.9 | Lipid transport and metabolism |
Y | 0 | 0.0 | Nuclear structure |
F | 39 | 2.4 | Nucleotide transport and metabolism |
O | 53 | 3.3 | Posttranslational modification, protein turnover, chaperones |
A | 2 | 0.1 | RNA processing and modification |
L | 71 | 4.4 | Replication, recombination and repair |
Q | 5 | 0.3 | Secondary metabolites biosynthesis, transport and catabolism |
T | 18 | 1.1 | Signal transduction mechanisms |
K | 60 | 3.7 | Transcription |
J | 164 | 10.2 | Translation, ribosomal structure and biogenesis |
- | 426 | 26.5 | Not in COGs |