From: Veillonella, Firmicutes: Microbes disguised as Gram negatives
Phylum | Name of organism and strain | Strain designation | Type strain? | NCBI Taxon ID | NCBI Project ID |
---|---|---|---|---|---|
Acidobacteria | Acidobacterium capsulatum | ATCC 51196 | Yes | 240015 | 28085 |
Acidobacteria | “Korebacter versatiles” | Ellin 345 | 204669 | 15771 | |
Acidobacteria | “Solibacter usitatus” | Ellin6076 | 234267 | 12638 | |
Actinobacteria | Bifidobacterium bifidum | 317B | No | 1681 | 42863 |
Actinobacteria | Catenulispora acidiphila | ID139908, DSM 44928 | Yes | 479433 | 21085 |
Actinobacteria | Corynebacterium pseudotuberculosis | C231 | No | 681645 | 40875 |
Actinobacteria | Segniliparus rugosus | ATCC BAA-974 | Yes | 679197 | 40685 |
Actinobacteria | Streptomyces bingchenggensis | BCW-1 | Name not validly published | 749414 | 46847 |
Actinobacteria | Tropheryma whipplei | Twist | Yes | 203267 | 95 |
Aquificae | Persephonella marina | EX-H1 | Yes | 123214 | 12526 |
Aquificae | Sulfurihydrogenibium sp. | YO3AOP1 | No type strain available | 436114 | 18889 |
Aquificae | Thermocrinis albus | HI 11/12, DSM 14484 | Yes | 638303 | 37275 |
Bacteroidetes | Bacteroides thetaiotaomicron | VPI-5482 | Yes | 226186 | 399 |
Bacteroidetes | Candidatus Sulcia muelleri | DMIN | 641892 | 37785 | |
Bacteroidetes | Chitinophaga pinensis | UQM 2034, DSM 2588 | Yes | 485918 | 27951 |
Bacteroidetes | Paludibacter propionicigenes | WB4, DSM 17365 | Yes | 694427 | 42009 |
Chlamydiae | Protochlamydia amoebophila | UWE25 | Yes | 264201 | 10700 |
Chlamydiae | Chlamydia trachomatis | E/Sweden2 | No | 634464 | 43167 |
Chlamydiae | Chlamydophila pneumoniae | AR39 | No | 115711 | 247 |
Chlamydiae | Waddlia chondrophila | WSU 86-1044 | Yes | 716544 | 43761 |
Chlorobi | “Chlorobium chlorochromatii” | CaD3 | Name not validly published | 340177 | 13921 |
Chlorobi | Chlorobium tepidum | TLS | Yes | 194439 | 302 |
Chloroflexi | Chloroflexus aggregans | DSM 9485 | Yes | 326427 | 16708 |
Chloroflexi | Dehalococcoides sp | BAV1 | No | 216389 | 15770 |
Chloroflexi | Herpetosiphon aurantiacus | ATCC 23779 | Yes | 316274 | 16523 |
Chloroflexi | Roseiflexus sp. | RS-1 | No type strain available | 357808 | 16190 |
Cyanobacteria | Anabaena variabilis 3 | ATCC 2941 | No | 240292 | 10642 |
Cyanobacteria | Cyanothece sp. | PCC 7822 | No | 497965 | 28535 |
Cyanobacteria | Prochlorococcus marinus | MIT9301 | No | 167546 | 15746 |
Cyanobacteria | Synechocystis sp. | PCC6803 | No | 1148 | 60 |
Deferribacteres | Calditerrivibrio nitroreducens | Yu37-1, DSM 19672 | Yes | 768670 | 49523 |
Deferribacteres | Deferribacter desulfuricans | SSM1, DSM 14783 | Yes | 197162 | 37285 |
Deferribacteres | Denitrovibrio acetiphilus | N2460, DSM 12809 | Yes | 522772 | 29431 |
Deinococcus-Thermus | Oceanithermus profundus | 506, DSM 14977 | Yes | 670487 | 40223 |
Deinococcus-Thermus | Thermus thermophilus | HB8 | Yes | 300852 | 13202 |
Deinococcus-Thermus | Truepera radiovictrix | RQ-24, DSM 17093 | Yes | 649638 | 38371 |
Dictyoglomi | Dictyoglomus turgidum | DSM 6724 | Yes | 515635 | 29175 |
Elusimicrobia | Elusimicrobium minutum | Pei 191 | Yes | 445932 | 19701 |
Fibrobacteres | Fibrobacter succinogenes | S85 | Yes | 59374 | 32617 |
Firmicutes | Acetohalobium arabaticum | Z-7288, DSM 5501 | Yes | 574087 | 32769 |
Firmicutes | Acidaminococcus fermentans | VR4, DSM 20731 | Yes | 591001 | 33685 |
Firmicutes | Acidaminococcus sp. | D21 | No type strain available | 563191 | 34117 |
Firmicutes | Alkaliphilus oremlandii | OhILAs | Yes | 350688 | 16083 |
Firmicutes | Bacillus subtilis subsp. subtilis | 168 | Yes | 224308 | 76 |
Firmicutes | Clostridium botulinum | F Langeland | No | 441772 | 19519 |
Firmicutes | Clostridium cellulolyticum | H10 | Yes | 394503 | 17419 |
Firmicutes | Clostridium difficile | 630 (epidemic type X) | No | 272563 | 78 |
Firmicutes | “Desulfotomaculum reducens” | MI-1 | Name not validly published | 349161 | 13424 |
Firmicutes | Dialister invisus | DSM 15470 | Yes | 592028 | 33143 |
Firmicutes | Dialister micraerophilus | Oral Taxon 843 DSM 19965 | Yes | 888062 | 53029 |
Firmicutes | Dialister micraerophilus | UPII-345-E | No | 910314 | 59521 |
Firmicutes | Enterococcus faecalis | V583 | No | 226185 | 70 |
Firmicutes | Eubacterium cylindroides | T2-87 | No | 717960 | 45917 |
Firmicutes | Eubacterium rectale | A1-86, DSM 17629 | No | 39491 | 39159 |
Firmicutes | Exiguobacterium sibiricum | 255-15 | Yes | 262543 | 10649 |
Firmicutes | Geobacillus kaustophilus | HTA426 | Yes | 235909 | 13233 |
Firmicutes | Lactococcus lactis cremoris | MG1363 | No | 416870 | 18797 |
Firmicutes | Lysinibacillus sphaericus | C3-41 | No | 444177 | 19619 |
Firmicutes | Megamonas hypermegale | ART12/1 | No | 158847 | 39163 |
Firmicutes | Megasphaera genomosp. | type 1 28L | No type strain available | 699218 | 42553 |
Firmicutes | Megasphaera micronuciformis | F0359 | No | 706434 | 43125 |
Firmicutes | Mitsuokella multacida | A 405-1, DSM 20544 | Yes | 500635 | 28653 |
Firmicutes | Paenibacillus sp. | JDR-2 | No | 324057 | 20399 |
Firmicutes | Phascolarctobacterium sp. | YIT 12067 | No | 626939 | 48505 |
Firmicutes | Selenomonas artemidis | F0399 | No | 749551 | 47277 |
Firmicutes | Selenomonas flueggei | ATCC 43531 | Yes | 638302 | 37273 |
Firmicutes | Selenomonas noxia | ATCC 43541 | Yes | 585503 | 34641 |
Firmicutes | Selenomonas sp. | Oral Taxon 137 F0430 | No type strain available | 879310 | 52055 |
Firmicutes | Selenomonas sp. | Oral Taxon 149 67H29BP | No type strain available | 864563 | 50535 |
Firmicutes | Selenomonas sputigena | DSM 20758 | Yes | 546271 | 51247 |
Firmicutes | Staphylococcus aureus aureus | ED98 | No | 681288 | 39547 |
Firmicutes | Streptococcus pneumoniae | TIGR4 | No | 170187 | 277 |
Firmicutes | Thermoanaerobacter sp. | X514 | Name not validly published | 399726 | 16394 |
Firmicutes | Thermosinus carboxydivorans | Nor1 | Yes | 401526 | 17587 |
Firmicutes | Turicibacter sp. | PC909 702450 42765 | No | ||
Firmicutes | Veillonella atypica | ACS-049-V-Sch6 | No | 866776 | 51075 |
Firmicutes | Veillonella atypica | ACS-134-V-Col7a | No | 866778 | 51079 |
Firmicutes | Veillonella dispar | ATCC 17748 | Yes | 546273 | 30491 |
Firmicutes | Veillonella parvula | ATCC 17745 | No | 686660 | 41557 |
Firmicutes | Veillonella parvula | Te3, DSM 2008 | Yes | 479436 | 21091 |
Firmicutes | Veillonella sp. | 3 1 44 | Name not validly published | 457416 | 41975 |
Firmicutes | Veillonella sp. | 6 1 27 | Name not validly published | 450749 | 41977 |
Firmicutes | Veillonella sp. | Oral Taxon 158 F0412 | Name not validly published | 879309 | 52053 |
Fusobacteria | Fusobacterium nucleatum nucleatum | ATCC 25586 | Yes | 190304 | 295 |
Fusobacteria | Ilyobacter polytropus | CuHBu1, DSM 2926 | Yes | 572544 | 32577 |
Fusobacteria | Leptotrichia buccalis | C-1013-b, DSM 1135 | Yes | 523794 | 29445 |
Fusobacteria | Sebaldella termitidis | NCTC 11300 | Yes | 526218 | 29539 |
Fusobacteria | Streptobacillus moniliformis | 9901, DSM 12112 | Yes | 519441 | 29309 |
Planctomycetes | Pirellula staleyi | DSM 6068 | Yes | 530564 | 29845 |
Planctomycetes | Planctomyces limnophilus | Mu 290, DSM 3776 | Yes | 521674 | 29411 |
Proteobacteria | Acinetobacter baumannii | SDF | No | 509170 | 13001 |
Proteobacteria | Alkalilimnicola ehrlichii | MLHE-1 | Yes | 187272 | 15763 |
Proteobacteria | Arcobacter nitrofigilis | DSM 7299 | Yes | 572480 | 32593 |
Proteobacteria | Burkholderia xenovorans | (fungorum) LB400 | Yes | 266265 | 254 |
Proteobacteria | Campylobacter jejuni doylei | 269.97 | No | 360109 | 17163 |
Proteobacteria | Candidatus Pelagibacter ubique | SAR11 HTCC1062 | Name not validly published | 335992 | 13989 |
Proteobacteria | Candidatus Zinderia insecticola | CARI | Name not validly published | 871271 | 51243 |
Proteobacteria | Cellvibrio japonicus | Ueda107 | Yes | 498211 | 28329 |
Proteobacteria | Cupriavidus taiwanensis | LMG19424 | Yes | 164546 | 15733 |
Proteobacteria | Escherichia coli | K-12, MG1655 | No | 511145 | 225 |
Proteobacteria | Geobacter uraniireducens | Rf4 | Yes | 351605 | 15768 |
Proteobacteria | Hahella chejuensis | KCTC 2396 | Yes | 349521 | 16064 |
Proteobacteria | Haliangium ochraceum | SMP-2, DSM 14365 | Yes | 502025 | 28711 |
Proteobacteria | Helicobacter pylori | 908 | No | 869727 | 50869 |
Proteobacteria | Lawsonia intracellularis | PHE/MN1-00 | No | 363253 | 183 |
Proteobacteria | Magnetococcus sp. | MC-1 | Name not validly published | 156889 | 262 |
Proteobacteria | Methylobacterium nodulans | ORS2060 | Yes | 460265 | 20477 |
Proteobacteria | Neisseria meningitidis | Z2491 | No | 122587 | 252 |
Proteobacteria | Neorickettsia sennetsu | Miyayama | Yes | 222891 | 357 |
Proteobacteria | Nitrosomonas eutropha | C91 (C71) | Yes | 335283 | 13913 |
Proteobacteria | Photorhabdus luminescens laumondii | TT01 | Yes | 243265 | 9605 |
Proteobacteria | Polynucleobacter necessarius | STIR1 | No | 452638 | 19991 |
Proteobacteria | Pseudomonas aeruginosa | LESB58 | No | 557722 | 31101 |
Proteobacteria | Pseudomonas fluorescens | SBW25 | No | 216595 | 31229 |
Proteobacteria | Pseudomonas stutzeri | A1501 | No | 379731 | 16817 |
Proteobacteria | Salmonella enterica enterica | PT4 P125109 | No | 550537 | 30687 |
Proteobacteria | Shewanella oneidensis | MR-1 | Yes | 211586 | 335 |
Proteobacteria | Sorangium cellulosum | So ce56 | No | 448385 | 28111 |
Proteobacteria | Stigmatella aurantiaca | DW4/3-1 | No | 378806 | 52561 |
Proteobacteria | Sulfurospirillum deleyianum | 5175, DSM 6946 | No | 525898 | 29529 |
Proteobacteria | Vibrio cholerae | O395 | No | 345073 | 32853 |
Spirochaetes | Borrelia turicatae | 91E135 | Yes | 314724 | 13597 |
Spirochaetes | Brachyspira murdochii | 56-150, DSM 12563 | Yes | 526224 | 29543 |
Spirochaetes | Leptospira interrogans | lai 56601 | No | 189518 | 293 |
Synergistetes | Thermanaerovibrio acidaminovorans | Su883, DSM 6589 | Yes | 525903 | 29531 |
Tenericutes | Acholeplasma laidlawii | PG-8A | No | 441768 | 19259 |
Tenericutes | Candidatus Phytoplasma asteris | yellows witches’-broom AY-WB 322098 | Name not validly published | 13478 | |
Tenericutes | Candidatus Phytoplasma mali | AT | Name not validly published | 37692 | 25335 |
Tenericutes | Mycoplasma genitalium | G37 | Yes | 243273 | 97 |
Tenericutes | Mycoplasma pneumoniae | FH | No | 722438 | 49525 |
Tenericutes | Ureaplasma parvum | sv 3, ATCC 27815 | No | 505682 | 19087 |
Thermotogae | Fervidobacterium nodosum | Rt17-B1 | Yes | 381764 | 16719 |
Thermotogae | Kosmotoga olearia | TBF 19.5.1 | Yes | 521045 | 29419 |
Thermotogae | Petrotoga mobilis | SJ95 | Yes | 403833 | 17679 |
Thermotogae | Thermotoga naphthophila | RKU-10 | Yes | 590168 | 33663 |
Verrucomicrobia | Akkermansia muciniphila | ATCC BAA-835 | Yes | 349741 | 20089 |
Verrucomicrobia | Opitutus terrae | Yes | PB90-1 | 452637 | |
Crenarchaeota | Sulfolobus solfataricus | P2 | 273057 | 108 | |
Crenarchaeota | Thermosphaera aggregans | M11TL, DSM 11486 | Yes | 633148 | 36571 |
Euryarchaeota | Halogeometricum borinquense | PR3, DSM 11551 | Yes | 469382 | 20743 |
Euryarchaeota | Methanocella sp. | RC-I | Name not validly published | 351160 | 19641 |
Euryarchaeota | Methanothermus fervidus | V24S, DSM 2088 | Yes | 523846 | 33689 |
Korarchaeota | Candidatus Korarchaeum cryptofilum | OPF8 | Name not validly published | 374847 | 16525 |
Nanoarchaeota | “Nanoarchaeum equitans” | Kin4-M | Name not validly published | 228908 | 9599 |